Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00422 ATGGAATTCTTATTCCTTCACTCATTTTTCTTCTCCACTTTCTTCCTCCTCTGCTTTTCCGCCGCCGCCAATCACCACTGGATCGGCCCCACCGGCCACCGCCTCATAAAAGTGAACGTTAAGGGTGGCTCCGACGTGTTTCTGTCCGTGCAAGCCGCCGTGGATTCAGTTCCCGATTACAATACCGTTAACACTATCATCCGAATCAGCCCTGGATATTACGTGGAGAAAGTAGTGGTGCCGGCGACGAAGCCGTACATAACATTTGAAGGAGGAGGAAAAGAGACGACGGTGATTGAGTGGCATGACAGGGCCGGTGACCGTGGTCCGAGCGGACAGCAGCTTCGTACTTACAGAACTGCCTCCGTTACTGTTTTTGCTAATTACTTCTCTGCCCGAAACATCAGCTTCAAGAATACGGCACCGGCTCCATTGCCCGGAATGCAAGGGTGGCAGGCGGCGGCATTTCGGATATCCGGCGACAAAGCCTACTTTTCGGGTTGCGGATTCTACGGGGCACAAGATACCCTTTGCGACGACGCCGGCCGCCATTACTTCAAAGAATGTTACATTGAAGGCTCCATAGACTTCATCTTTGGAAATGGCCGTTCCATGTATAAGGATTGCGAACTGCACTCCATCGCCACCCGGTTTGGTTCCATAGCAGCGCAAGATAGAAACTCGCCAATCGAAAAGACCGGGTTCGCTTTCCTGCGGTGTAAGGTAACCGGTTCAGGACCCGTCTACGTGGGTCGTGCCATGGGCCAGTACTCCAGAATTGTCTACGCGTATACTTACTTTGATGATGTGGTAGCACACGGTGGATGGGATGACTGGGACCATGTCAGCAACAAAAACAAGACTGTATTTTTTGGAGTATACAAGTGCTGGGGGCCAGGGGCGAGTAAAGTAAAAGGAGTGTCATGGGCCAAGGAGTTGGAGTATAAAGAGGCACATCCATTTCTAGCCAAGAGCTTTGTCAATGGCAGACACTGGATTGCACCCTCTGATGCTTAG 1017 51.43 MEFLFLHSFFFSTFFLLCFSAAANHHWIGPTGHRLIKVNVKGGSDVFLSVQAAVDSVPDYNTVNTIIRISPGYYVEKVVVPATKPYITFEGGGKETTVIEWHDRAGDRGPSGQQLRTYRTASVTVFANYFSARNISFKNTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAQDRNSPIEKTGFAFLRCKVTGSGPVYVGRAMGQYSRIVYAYTYFDDVVAHGGWDDWDHVSNKNKTVFFGVYKCWGPGASKVKGVSWAKELEYKEAHPFLAKSFVNGRHWIAPSDA* 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2799276 2804242 + CsaV3_5G004220.1 Csa05g00422 528809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00422 338 Pfam Pectinesterase 41 329 IPR000070 GO:0030599|GO:0042545
Csa05g00422 338 PANTHER PECTINESTERASE 68-RELATED 23 337 - -
Csa05g00422 338 SUPERFAMILY Pectin lyase-like 35 335 IPR011050 -
Csa05g00422 338 ProSitePatterns Pectinesterase signature 2. 191 200 IPR033131 -
Csa05g00422 338 Gene3D - 34 337 IPR012334 -
Csa05g00422 338 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 23 337 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00422 Csa-Chr5:2799276 Csa07g00944 Csa-Chr7:8228368 1.77E-91 dispersed
Csa05g03005 Csa-Chr5:30349629 Csa05g00422 Csa-Chr5:2799276 2.04E-73 dispersed
Csa05g00422 Csa-Chr5:2799276 Csa02g02065 Csa-Chr2:18904116 1.14E-78 transposed
Csa05g00422 Csa-Chr5:2799276 Csa02g01264 Csa-Chr2:12354798 2.95E-79 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00422 - - csv:101204661 690.263