Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00425 ATGGTGATGATGATGATGATGAGAGGAGGAATAGAAGATGCGGCGGTGATCGGAGGATTAATGACGGTGCAGTTGATATACGCCGGAAATTCGGTGTTGTTGAGTTATTTGATGTCGTTAGGGCTAAATCCGCTCACCGTCGTTGTTTGTTTCGCCGCTGCTACTTCTCTCTTTCTCTCTCCTCTCGCCTTTTATTTTGAAAGGAGGAAGTGGCCAAAGAAATTGAGTTTTAAGTTGATGCTTCAACTTGTTCTCATCTCCTTTGGAGGAGTAACTTTGTTCCAAAGTTTGCTATTAGAAGGAATAAAGCTGACTTCTCCAGCAATGGCTACTGCCATGCCCAACCTTGCCCCTGGTCTCATCTTTATCATTGCCTGGTGTTTTAGATTAGAGAAAGTGGAATTTAGTTGTGTATACAGCAAAGTAAAGATATTAGGGACAATACTATGTGTAGTAGGTGCAATCACAATGAGCATAATACAAAGCAGCATTATAATACCATCAAAACACCAACAACTAATGACAACTTCTCCACCACCACTTACCACCATTGTACTCTTCAATAAGGAAAAGATTGTTGGTTGTTTCTACTTAATGCTCTCTGTCTTCATACTATCAAGCAATGTTGTCTTGCAGGCAACAGCACTAGGTGAATTACCAGCACCAATGTCATTGAGTGCAATAACATCCTTTATTGGAGTGTTCACCACAGCAGCTATAATGCTACTCCAAAATCACAACTTACTAACAGATTTGTCCATTCTCAACATCAAGGATTTACTCTCTTATTCTCTTTTGGGAGGAATAGTGAGTGGGATAAGCTTGAGCTTCAATGGATGGGCAATGAAGAAGAGAGGGCCAGTTTTGGTATCAATTTTCAGTCCAATTGGAACTGTTTTCTCTGTCCTTCTCTCTCTCTTCACCTTAGGAGACACTATTTCTGTTGGAAGTGTTGGTGGTATGTTGTTGATGTTCAGTGGACTCTACTTTGTGCTATGGGCAAAAAGAAAAGAAGGCTATGGTGATGGAAGTGGCTATCTAACTGATGATGACTTTGATCTTCAAAAACCTTTACTCTCTTAG 1083 40.54 MVMMMMMRGGIEDAAVIGGLMTVQLIYAGNSVLLSYLMSLGLNPLTVVVCFAAATSLFLSPLAFYFERRKWPKKLSFKLMLQLVLISFGGVTLFQSLLLEGIKLTSPAMATAMPNLAPGLIFIIAWCFRLEKVEFSCVYSKVKILGTILCVVGAITMSIIQSSIIIPSKHQQLMTTSPPPLTTIVLFNKEKIVGCFYLMLSVFILSSNVVLQATALGELPAPMSLSAITSFIGVFTTAAIMLLQNHNLLTDLSILNIKDLLSYSLLGGIVSGISLSFNGWAMKKRGPVLVSIFSPIGTVFSVLLSLFTLGDTISVGSVGGMLLMFSGLYFVLWAKRKEGYGDGSGYLTDDDFDLQKPLLS* 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2818496 2821499 - CsaV3_5G004250.1 Csa05g00425 528812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00425 360 SUPERFAMILY Multidrug resistance efflux transporter EmrE 256 337 - -
Csa05g00425 360 PANTHER WAT1-RELATED PROTEIN 14 360 IPR030184 GO:0016021|GO:0022857
Csa05g00425 360 SUPERFAMILY Multidrug resistance efflux transporter EmrE 57 158 - -
Csa05g00425 360 Pfam EamA-like transporter family 194 332 IPR000620 GO:0016020|GO:0016021
Csa05g00425 360 Pfam EamA-like transporter family 21 158 IPR000620 GO:0016020|GO:0016021
Csa05g00425 360 PANTHER OS11G0588100 PROTEIN 14 360 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00425 Csa-Chr5:2818496 Csa05g01814 Csa-Chr5:21408081 1.56E-41 dispersed
Csa03g00265 Csa-Chr3:2140048 Csa05g00425 Csa-Chr5:2818496 4.67E-133 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00425 - - csv:101204100 678.322