Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00429 ATGGTCAAGTTGGCTGTAGGTTCCGCCGCCGATTCATTCAGTGCGGCTTCTCTTAAAGCCTATCTCTCTGAATTCATCGCCACTCTCCTTTTCGTTTTCGCCGGTGTTGGCTCCGCCATTGCCTACGGTAAATTGACGTCCGATGCAGCATTGGATCCACCAGGTTTGGTGGCAGTGGCAGTGGCTCACGCATTTGCTTTGTTTGTGGGTGTGTCGATGGCAGCCAACATCTCCGGTGGGCACCTGAACCCAGCAGTGACTTTTGGGTTGGCCATCGGCGGCAACATCACCATCTTGACTGGCTTGTTCTATTGGATAGCCCAATTGCTTGGCTCCATTGTTGCTTGCCTCCTCCTTCAATTTGTTACCAACGGCAAGAGCATTCCAACCCACGGCGTGGCAGCAGGACTTGGAGCAATTGAAGGAGTTGTCTTCGAAATAATAATCACCTTCGGTCTGGTCTACACAGTTTACGCCACCGCCGCGGACCCCAAAAAGGGTTCTCTTGGAACCATTGCCCCAATCGCCATCGGCTTCATTGTGGGTGCCAACATTCTCGCTGCTGGCCCATTTAGCGGTGGGTCCATGAACCCGGCCCGTTCATTCGGCCCAGCTGTTGTAAGTGGAGACTTCTCTCAGATTTGGATCTACTGGGTCGGCCCACTTATTGGCGGTGGCCTTGCCGGGCTTATCTATGGCGATGTGTTTATTTCCTCTTATGCCCCTGTTCCCGTCTCTGGTGATTATGCTTAA 753 52.99 MVKLAVGSAADSFSAASLKAYLSEFIATLLFVFAGVGSAIAYGKLTSDAALDPPGLVAVAVAHAFALFVGVSMAANISGGHLNPAVTFGLAIGGNITILTGLFYWIAQLLGSIVACLLLQFVTNGKSIPTHGVAAGLGAIEGVVFEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLIGGGLAGLIYGDVFISSYAPVPVSGDYA* 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2845610 2848255 + CsaV3_5G004290.1 Csa05g00429 528816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00429 250 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g00429 250 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g00429 250 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g00429 250 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g00429 250 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g00429 250 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g00429 250 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Csa05g00429 250 Pfam Major intrinsic protein 14 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g00429 250 PANTHER AQUAPORIN-8 1 250 IPR034294 -
Csa05g00429 250 PANTHER AQUAPORIN TIP2-2-RELATED 1 250 - -
Csa05g00429 250 Gene3D Glycerol uptake facilitator protein. 2 243 IPR023271 -
Csa05g00429 250 SUPERFAMILY Aquaporin-like 16 239 IPR023271 -
Csa05g00429 250 CDD MIP 19 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g00429 250 TIGRFAM MIP: MIP family channel proteins 23 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00429 Csa-Chr5:2845610 Csa07g02263 Csa-Chr7:21111287 1.21E-124 dispersed
Csa06g03729 Csa-Chr6:29782797 Csa05g00429 Csa-Chr5:2845610 2.11E-29 dispersed
Csa05g00429 Csa-Chr5:2845610 Csa06g02624 Csa-Chr6:23064934 2.49E-103 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00429 K09873 - csv:101203925 468.774