Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00460 ATGTACCACACCACTAAATCAGAGTCCGATTTTTGTTTCCTAGACCCAATTCGCCGCCACTTATTAGGTGAATCGGATATTTCCGCCGCCGCCGCCGCTCCCCTCGGCAGACCCACTCCCGTTTTCACTCGGAGTGGTAGTTTTAGTAGCTTAATTCCATGTCTTGAAGACAATTGGGGTGATTTGCCTCTCAAGGTTGACGACTCCGAAGATATGATGCTCGCCGCCGTTCTACGGGACGCCGTCGGTGTTGGATGGGTTCCATCGCTAGGAAGTTGTGATTTTGGGTTTTCTGAGGTGAAATCAGAGCCGGAGGTGATTCCATTGAGTTTCCCCGCGGTGTTACCGAATGTGACGATGAAGCCGACCGTGGTACCAGAGAAAGGGAAGCATTATAGAGGAGTGCGACAACGGCCATGGGGGAAATTCGCGGCGGAGATTCGAGACCCAGCGAAAAATGGAGCAAGAGTTTGGCTTGGAACGTACGAGACGGCAGAGGATGCGGCGTTGGCTTATGATCGAGCGGCTTACCGAATGCGAGGATCAAGGGCTTTGCTTAATTTCCCCCTCCGTGTCAACTCCGGCGAGCCGGAACCAGTTCGGGTGACATCAAAGCGATCGTCGCCGGAGGTATCTTCGTCGCCGAAGCGAAGAAAGAAAGTTGGGTCCGCTGTGGAGAGTGTAGGAGTACAAGTGGAGCAACAAGTGGCAAGCTTTACACATGGAGGACAGCTGTTTGTTAGCCAATGCTAA 753 52.86 MYHTTKSESDFCFLDPIRRHLLGESDISAAAAAPLGRPTPVFTRSGSFSSLIPCLEDNWGDLPLKVDDSEDMMLAAVLRDAVGVGWVPSLGSCDFGFSEVKSEPEVIPLSFPAVLPNVTMKPTVVPEKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPEPVRVTSKRSSPEVSSSPKRRKKVGSAVESVGVQVEQQVASFTHGGQLFVSQC* 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3003933 3005267 + CsaV3_5G004600.1 Csa05g00460 528847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00460 250 SMART rav1_2 131 195 IPR001471 GO:0003700|GO:0006355
Csa05g00460 250 Gene3D AP2/ERF domain 130 192 IPR036955 GO:0003700|GO:0006355
Csa05g00460 250 CDD AP2 130 189 IPR001471 GO:0003700|GO:0006355
Csa05g00460 250 PRINTS Ethylene responsive element binding protein signature 132 143 IPR001471 GO:0003700|GO:0006355
Csa05g00460 250 PRINTS Ethylene responsive element binding protein signature 155 171 IPR001471 GO:0003700|GO:0006355
Csa05g00460 250 PANTHER DNA-BINDING DOMAIN 25 231 IPR044808 GO:0003700|GO:0009873
Csa05g00460 250 Pfam AP2 domain 131 181 IPR001471 GO:0003700|GO:0006355
Csa05g00460 250 ProSiteProfiles AP2/ERF domain profile. 131 189 IPR001471 GO:0003700|GO:0006355
Csa05g00460 250 PANTHER BNAANNG21280D PROTEIN 25 231 - -
Csa05g00460 250 SUPERFAMILY DNA-binding domain 131 191 IPR016177 GO:0003677
Csa05g00460 250 MobiDBLite consensus disorder prediction 196 224 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00718 Csa-Chr3:6436760 Csa05g00460 Csa-Chr5:3003933 1.46E-29 dispersed
Csa03g00719 Csa-Chr3:6440441 Csa05g00460 Csa-Chr5:3003933 1.41E-30 dispersed
Csa03g01218 Csa-Chr3:9398556 Csa05g00460 Csa-Chr5:3003933 3.82E-27 dispersed
Csa05g00460 Csa-Chr5:3003933 Csa05g00490 Csa-Chr5:3175035 4.87E-32 dispersed
Csa03g00246 Csa-Chr3:1971594 Csa05g00460 Csa-Chr5:3003933 1.11E-106 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31689 PF00847 AP2 9.30E-15 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00460 K09286 - csv:101221583 464.922