Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00475 ATGCCTTCATGGTGGGGGAAGTCATCATCAAAAGAAGTAAAGAAAAGCAAGGAAAGTTTAATCGACACGTTGCAGAGAAAACTTAGAACTACCGATGGTAAAACAAACAGCAAATCAGGAGAGTCTCCAAGACATTGTAATGACACAATTTCTGAGCAGGGATCTCGATCTCCTATTCTTTCAAGATCAGTTTCCCCTTCCAAACAAGTTTTAAGATGTCAAAGCTTTTCTGAAAGGCCGCAAGCACAACCTCTTCCACTTCCTGGTGTGCAGCCACCAATTGTAGGTCGGACAGACTCTGGGATTAGTATTTCACCAAAACCAAGATCTGAAAGGGGCTCCAAGCCAACATCATTTCTACCACTTCCAAGACCAGCATGCATCCGTGGGCGGCCAAACCATGCAGATTTAGATGCAGATGTTGGTGTTGGCTCAGTGTCCAGTGAGAGCTCAACTGATAGCACAGATCTATTGGATTCACGCCATCGTAGTCCTCGGGCAACTGACTATGATCTTGGGACTAAAACTGCTGCAAGCAGTCCTTCCAGTGTCATTCTCAAGGATCAGTCTTCTACTGTCACCCAACCAAGTTTGCAAAAGGCCAGAAAACCGGCTAATATCTCATTGAGCAACCACATTTTCTCAACATCACCCAAGCGCAGACCTTTAAGCAGTCATGTTCCAAATCTGCAAGTTCCATATCATGGGAATGTATGCATTGCTCCTGATAGTTCAATGTCAAGTCCTTCTAGGAGTCCCATAAGGGCATTTAGCTCCGAGCAAGTTATTAATAATGCTGTCAGTACTGGAAAATTCTATATGGATGTCACATTTCCTGGGTCAGGCCATTGTTCCAGTCCTGGTTCTGGTTACAATTCTGGACATAATTCTATGGGTGGGGATTTGTCAGGGCAGTTATTTTTGCAACAAAGCCGGGGTAGCCCTGAATATTCTCCAGTACCCAGTCCCAGAATGACCAGCCCTGGCCCAAGCTCCAGAGTCCATAGTGGTGCAGTGACCCCAATTCATCCTAGGGCGGGAGGTATACCAACTGATTCACAGACAAGCTGGCCTGATGAGAAGCAAACTCACCGCCTGCCTCTACCTCCCGTTGCAATTTCCAACGCTCCTTTTTCTCATTCCAATTCAGCTGCAACTTCTCCCTCTGTTCCAAGAAGTCCTGGAAGGGCTGATAATCCGGCAAGCCCGGGCTCCCGTTGGAAAAAGGGGAAGCTCTTGGGTAGGGGCACTTTTGGACATGTGTATGTTGGTTTTAACAGTGAAAGTGGTGAAATGTGTGCAATGAAGGAAGTTACATTATTTTCTGATGATGCGAAGTCCAAGGAGAGTGCCAAGCAATTAATGCAAGAAATTACCTTGTTGAGTCGTTTACGACATCCAAATATTGTGCAGTATTATGGATCTGAAACGGTTGGGGACAGGTTTTACATTTACCTTGAATATGTATCTGGTGGCTCTATTTACAAGCTTCTCCAGGAATATGGACAGCTTGGAGATTCAGCACTTCGTAGTTATACTCAGCAAATATTGTCGGGGCTTGCATATTTACATGCTAAAAGTACAGTTCACAGGGATATCAAAGGAGCAAATATACTTGTTGATCCTACTGGTCGTGTTAAGTTGGCTGACTTTGGGATGGCAAAACATATCACTGGCCAATCGTGCCCTTTGTCATTTAAAGGAAGCCCATATTGGATGGCACCCGAGGTTATCAAAAACTCAAATGGTTGCAACCTTGCGGTAGATATTTGGAGTCTTGGATGCACTGTTTTGGAGATGGCAACAACAAAACCTCCTTGGAGTCAATATGAGGGAGTCGCTGCGATGTTCAAGATTGGCAACAGCAAAGAACTTCCTGAAATCCCAGATTACCTTTCACATGATGGAAAAGATTTTGTTAGACAATGTCTGCAACGGAATCCTGCTCATCGTCCTACAGCTGCTCAGCTTTTGGAACATCCTTTTGTGAAACATGCTGCACCTCTTGAAAGACTGATTTTAGGTTCTGAACATTCAGATCCAACTCCAGGAATTACAAATGGAGTAAGAACATTGGGTATTGAACAAGGAAGGAATCCCAGCTTCTTGGATTCTGATAGATCTGCAGCTCATTCATCTAGACTCCCAACAGCTGCTTTCCATTCCAGTGAAATTCATATTCCAAGGAACCTATCATGCCCTGTTTCGCCCATCGGAAGCCCACTGGTGCACTCACGGTCGCCACAACATCCGAGTGGAAGAATGTCTCCGTCACCCATATCTAGCCCTCGTAACATGTCGGGCGCATCTACTCCTCTCACAGGAGGAAGCGGTGCCATTCCACATCAGCATCTCAAGCAATCACTGTACCTACAGGAGGGTTTTGGGAACTTGCCAAAACCTTCAATGGCTCCTTATAGTAATGGTCCTTCCTTTCACGATACTAACCCTGACATCTTTCAGGGGATTCAGCCAGGCTCACACATCTTTTCTGAGCTTGTACACCATGAAACCGATTTTCTGGGCAAGCAGTTTGGAAAGCCTGCCTGGGAATTGTATGACGGGCAGGCGGTCTTGGCTGATCGTGTTTCCAGGCAGCTGCTGAGTGATCACATAACAACTCCCTCCCTGGATTTAAGTCCAAGCTCTCTTTTGACCAACCGCAAATAG 2670 45.62 MPSWWGKSSSKEVKKSKESLIDTLQRKLRTTDGKTNSKSGESPRHCNDTISEQGSRSPILSRSVSPSKQVLRCQSFSERPQAQPLPLPGVQPPIVGRTDSGISISPKPRSERGSKPTSFLPLPRPACIRGRPNHADLDADVGVGSVSSESSTDSTDLLDSRHRSPRATDYDLGTKTAASSPSSVILKDQSSTVTQPSLQKARKPANISLSNHIFSTSPKRRPLSSHVPNLQVPYHGNVCIAPDSSMSSPSRSPIRAFSSEQVINNAVSTGKFYMDVTFPGSGHCSSPGSGYNSGHNSMGGDLSGQLFLQQSRGSPEYSPVPSPRMTSPGPSSRVHSGAVTPIHPRAGGIPTDSQTSWPDEKQTHRLPLPPVAISNAPFSHSNSAATSPSVPRSPGRADNPASPGSRWKKGKLLGRGTFGHVYVGFNSESGEMCAMKEVTLFSDDAKSKESAKQLMQEITLLSRLRHPNIVQYYGSETVGDRFYIYLEYVSGGSIYKLLQEYGQLGDSALRSYTQQILSGLAYLHAKSTVHRDIKGANILVDPTGRVKLADFGMAKHITGQSCPLSFKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPEIPDYLSHDGKDFVRQCLQRNPAHRPTAAQLLEHPFVKHAAPLERLILGSEHSDPTPGITNGVRTLGIEQGRNPSFLDSDRSAAHSSRLPTAAFHSSEIHIPRNLSCPVSPIGSPLVHSRSPQHPSGRMSPSPISSPRNMSGASTPLTGGSGAIPHQHLKQSLYLQEGFGNLPKPSMAPYSNGPSFHDTNPDIFQGIQPGSHIFSELVHHETDFLGKQFGKPAWELYDGQAVLADRVSRQLLSDHITTPSLDLSPSSLLTNRK* 890
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3086912 3094232 + CsaV3_5G004750.1 Csa05g00475 528862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00475 889 MobiDBLite consensus disorder prediction 742 777 - -
Csa05g00475 889 MobiDBLite consensus disorder prediction 42 81 - -
Csa05g00475 889 CDD STKc_MEKK1_plant 406 663 - -
Csa05g00475 889 ProSitePatterns Protein kinases ATP-binding region signature. 413 436 IPR017441 GO:0005524
Csa05g00475 889 MobiDBLite consensus disorder prediction 283 317 - -
Csa05g00475 889 MobiDBLite consensus disorder prediction 1 206 - -
Csa05g00475 889 MobiDBLite consensus disorder prediction 155 169 - -
Csa05g00475 889 ProSiteProfiles Protein kinase domain profile. 407 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g00475 889 MobiDBLite consensus disorder prediction 738 781 - -
Csa05g00475 889 SMART serkin_6 407 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g00475 889 SUPERFAMILY Protein kinase-like (PK-like) 405 749 IPR011009 -
Csa05g00475 889 MobiDBLite consensus disorder prediction 283 410 - -
Csa05g00475 889 MobiDBLite consensus disorder prediction 173 206 - -
Csa05g00475 889 MobiDBLite consensus disorder prediction 10 41 - -
Csa05g00475 889 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 1 811 - -
Csa05g00475 889 MobiDBLite consensus disorder prediction 375 393 - -
Csa05g00475 889 Pfam Protein kinase domain 408 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g00475 889 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 811 - -
Csa05g00475 889 Gene3D Transferase(Phosphotransferase) domain 1 405 680 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g01727 Csa05g00475 CCT
Csa03g01727 Csa05g00475 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02001 Csa-Chr2:18601356 Csa05g00475 Csa-Chr5:3086912 1.50E-108 dispersed
Csa03g01727 Csa-Chr3:12943196 Csa05g00475 Csa-Chr5:3086912 0 dispersed
Csa05g00475 Csa-Chr5:3086912 Csa06g02776 Csa-Chr6:24207515 1.56E-138 dispersed
Csa05g00475 Csa-Chr5:3086912 Csa06g02922 Csa-Chr6:25325579 5.56E-115 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78216 PF00069 Pkinase 2.40E-71 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00475 K20717 - csv:101222716 1744.55