Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00483 ATGGAGGTGACGGCAGATCAAGCAAAGAGAAATCATATGTTGCTGCCTTCTTCTTCAGTTGTAGCCGTTGCTATCAGTGGGAAGAAAAACAGTAAATATATAATTAGGTGGTCATTGGAAAAGTTTCTACCTGAGGGCATCATTGATTTCAGGTTGTTGCACTTCATCCCAAGGATTACTAGTGTCCCAACTCCAATGGGAAATGCAATTCCAATTTCACAAGTTCGTGAGGATGTCGCTGCGGCTTATAGGAAAGAAATCTGGTGGCACACAAGTGAAAAACTTCTTCCATTTAAAAAGATGTTTGCTCAGCGAAAGGTTCATCTTGATGTTGTAACTCTTGAAGCAGATGATGTAGCAGGTGCAATAATAGAAGAGGTTACAAAGTGTTCAATCAACAAGCTTGTTATAGGGGTTTCATCACAGGGATTATTCTCAAGGAAACTAAGCGGTCTATCCTCAAGAATATCAGCCCTTGCACCTAGATATTGTACGGTGTATGCTATTTCAAAAGGAAAACTAGCCTCAATACGACCGCCTGATATGGATACGAACGTGAGCATTAGAGATGATGCGAGTGAAGAAAGTTCTGCAAGTAGCTACTCGAGCTATACATCTAGCTCCCTTACAGATGGCAGTTCAAGCTTAACTAGCTCTTACTCTCATTTCCCTTCTCCTTCCCCTTCCCTACCATTACAACGATTTCAAGCTCTTTCAACCATTAATCAACCACTTCTTACGAAAAAACCTAGCCCCATTAAAGCCGACCATTCTAGATGTCAATCCGTTGACATTGAGAATCAGGTGGATGGCGTTCATTCTTCTTCCTATGTTTCAGACTGCATACAAACATTGAGTCGAGCCTCTAGTAGTAAAAGCTCGCCAGCAGAGAACAAGTCTTGGAATTCTGATGAAGCTTCATCTTCAGGCATGTTTAATGATTATTCCTCATGTGAAAGTCAGGCGGATGTCAGCTTTGAACTTGAAAAGTTGAGAATCGAACTAAGACATGCGAGAGGAATGTTTGCAATTGCCCAACGAGAGACGATTGATGCTTCTCGAGAGCTGAACCATCTAAATAATCAACGATCAGAAGAAGCTAGGAAGCTCGAAGAGATCAACAACAAAGCGGTGGCTGCCAAAGAATTTGCAAGGGAAGAGAGAGTGAAACATGAAGCTTTGAGAAGAGAAGCAAAGTATGTAAAAGAACGCGCCGAAAGAGAGGGCATCTATAGGAAGGAAGCAGAGATGAAAGCTCTTCAAAATGCCAAAGAGAAGGGAAAGCATGAGAATGCTCTTCAAGGACCTCTGCAGCAATATCAACATTTTCAGTGGGAAGATATTGTTTCTGCCACATCATCTTTCTCTGAGGATCTTAAGATTGGAATGGGAGCACATGGAACAGTTTATAAGTGCAGTTTGCATCATACAACCGTAGCAGTGAAGGTTCTTCATTCTAGAGATAGTCACAAACAGATGCAATTGCTTCAGGAGCTAGAAGTCTTGAGCAGAATCCATCATCCCCATCTACTACTACTCCTCGGTGCTTGTCCGGATAAGAATTGTCTAGTTTATGAGTACATGGAAAATGGTAGCTTGGAGGATAGGTTATACCGCAGAGGCAATACACCTGCAATCCCATGGTATGAGAGGTTTCGAATTGCTTGGGAAATAGCCTCTGCTCTTGTCTTTCTTCACAGCTCAAAACCAAAATCAATAATCCACCGTGATCTTAAACCCGCAAACATCTTACTTGACCAAAACCTTGTGAGTAAAATCGGTGACGTCGGTCTTTCTACAGTGTTTAATTCAGATCCTTCAATGTCTACTGCATTCATGAATAGCGGACCAGTAGGGACTCTCTGTTACATAGATCCCGAGTATCAACGAACTGGATTAATCTCACCTAAGTCTGATGTCTATGCTTTTGGAATGGTGATCTTGCAGTTACTAACTGCAAAACCAGCGGTAGCACTAACCCATGTGGTGGAAACAGCCATTGATAACAGCAATTTAATTAACGTTCTGGATATAGAGGCTGGGCATTGGCCGCTCGAAGAGACATATGAATTGGCAAGATTAGGACTTCGCTGTGCCGAGATGCAACGTAAAGATAGGCCTGACTTGAAGGACCAAGTACTTCCCTTGTTGATGACACTGAAAAAAGTTGCTGATAAGGCTCGAAATTTGGCCTCCAAAGTTCCAGCTGCAATTCCTAACCATTTCATCTGTCCAATACTTCAGGATGTGATGAATGACCCTTGTGTTGCGGCGGATGGATACACATACGATCGTCAGGCAATAGAGAAGTGGCTTCAGAAGAACGATAACTCACCGATGACAAAGTTGCCGTTGCCAGATAAGAATTTAATACCAAACTATAGTCTGCTCTCTGCAATTGTTGAGTGGAACTCCAAAAGAAGTTGA 2427 42.32 MEVTADQAKRNHMLLPSSSVVAVAISGKKNSKYIIRWSLEKFLPEGIIDFRLLHFIPRITSVPTPMGNAIPISQVREDVAAAYRKEIWWHTSEKLLPFKKMFAQRKVHLDVVTLEADDVAGAIIEEVTKCSINKLVIGVSSQGLFSRKLSGLSSRISALAPRYCTVYAISKGKLASIRPPDMDTNVSIRDDASEESSASSYSSYTSSSLTDGSSSLTSSYSHFPSPSPSLPLQRFQALSTINQPLLTKKPSPIKADHSRCQSVDIENQVDGVHSSSYVSDCIQTLSRASSSKSSPAENKSWNSDEASSSGMFNDYSSCESQADVSFELEKLRIELRHARGMFAIAQRETIDASRELNHLNNQRSEEARKLEEINNKAVAAKEFAREERVKHEALRREAKYVKERAEREGIYRKEAEMKALQNAKEKGKHENALQGPLQQYQHFQWEDIVSATSSFSEDLKIGMGAHGTVYKCSLHHTTVAVKVLHSRDSHKQMQLLQELEVLSRIHHPHLLLLLGACPDKNCLVYEYMENGSLEDRLYRRGNTPAIPWYERFRIAWEIASALVFLHSSKPKSIIHRDLKPANILLDQNLVSKIGDVGLSTVFNSDPSMSTAFMNSGPVGTLCYIDPEYQRTGLISPKSDVYAFGMVILQLLTAKPAVALTHVVETAIDNSNLINVLDIEAGHWPLEETYELARLGLRCAEMQRKDRPDLKDQVLPLLMTLKKVADKARNLASKVPAAIPNHFICPILQDVMNDPCVAADGYTYDRQAIEKWLQKNDNSPMTKLPLPDKNLIPNYSLLSAIVEWNSKRS* 809
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3136618 3143599 + CsaV3_5G004830.1 Csa05g00483 528870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00483 808 MobiDBLite consensus disorder prediction 191 206 - -
Csa05g00483 808 MobiDBLite consensus disorder prediction 180 206 - -
Csa05g00483 808 ProSiteProfiles U-box domain profile. 737 808 IPR003613 GO:0004842|GO:0016567
Csa05g00483 808 Coils Coil 356 387 - -
Csa05g00483 808 SMART Ubox_2 741 803 IPR003613 GO:0004842|GO:0016567
Csa05g00483 808 PANTHER OS02G0152300 PROTEIN 16 804 - -
Csa05g00483 808 CDD STK_N 20 172 - -
Csa05g00483 808 Gene3D Phosphorylase Kinase; domain 1 423 527 - -
Csa05g00483 808 Gene3D Transferase(Phosphotransferase) domain 1 528 736 - -
Csa05g00483 808 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 35 16 804 - -
Csa05g00483 808 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 737 808 IPR013083 -
Csa05g00483 808 ProSitePatterns Protein kinases ATP-binding region signature. 461 482 IPR017441 GO:0005524
Csa05g00483 808 ProSitePatterns Serine/Threonine protein kinases active-site signature. 573 585 IPR008271 GO:0004672|GO:0006468
Csa05g00483 808 ProSiteProfiles Protein kinase domain profile. 455 717 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g00483 808 SMART serkin_6 455 717 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g00483 808 Pfam Protein kinase domain 457 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g00483 808 CDD RING-Ubox_WDSUB1_like 742 782 - -
Csa05g00483 808 Pfam U-box domain 738 807 IPR003613 GO:0004842|GO:0016567
Csa05g00483 808 SUPERFAMILY Protein kinase-like (PK-like) 436 711 IPR011009 -
Csa05g00483 808 SUPERFAMILY RING/U-box 732 807 - -
Csa05g00483 808 Coils Coil 328 348 - -
Csa05g00483 808 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 21 157 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00037 Csa-Chr2:323957 Csa05g00483 Csa-Chr5:3136618 8.49E-17 dispersed
Csa05g00483 Csa-Chr5:3136618 Csa06g02026 Csa-Chr6:18198203 7.88E-128 dispersed
Csa05g00483 Csa-Chr5:3136618 Csa03g04417 Csa-Chr3:38540278 1.38E-130 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78217 PF00069 Pkinase 1.40E-40 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00483 - - csv:101217665 1519.6