Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00485 ATGCTCAAACTAATCCTTCCCCTTGCTTCCGCCACCCTTTTCCTTCTCCTCCTAATCACCATCTTCCTTCTTCGCCTTAAGCTCTCTAAAAATCACGACATCGAGAAATCCTCCACCACCCGCAACAACAACAACACCAAAACAGACCACACCCCCCCTCCGCCCCCGCCCGAGCTCACCACTTTTGAGGGCGGCGAAGATTTGACCATTGACGAGATTTTAGAGGCTCCCGGAGAAGTGATCGGAAAATCCCACTACGGAACTCTCTACAAGGCTGTCTTACAGACCACCCAAACCATCCGGCTACTTAGATTTCTCCGGCCAGCCGCTGCCGGATGTGACGACCAACACGACCTCGTTCGGCTCCTGGGTTCGGTTCGGCATCCGAATTTGGTTCCGTTGCTGGGATTCTACGCCGGTGGGAGAGGTGAGAAGCTTTTGGTTCATCCGTTCTACGAACATGGGAATTTGGCGGAGTTCATTACAGATAAGGAATCAAAAAACGGGGTGGTGATTTGCAAAATCGCCATTGGAATCGCAAGAGCTCTACATCATCTTCACAACGGATTACAAAAACCAATCCCCCATGGAAATCTCAACTCCAAGAACGTTCTTCTCGATCAAAATTTCCACCCCCACGTCTCCGATTTCGGCCTTCATCTCCTCCTCAACTCCCCCGCAACTCGACAAATGCTCCAACTTTCCGCCTCCTCTGGCTACAAGGCCCCAGAACTTATCAATATGACCGACGCTGATGAACTCACCGACGTCTACAGCTACGGAAAGATCTTGCTCGAGTTGCTGATGTCCTCCAAAGACCCAACGGTTCGAAACCCGGCTGCCACCGGTGATTCCGGCGTCTCTCAAGAGCCGATTCTCCAATGCCTTGTTCAGATCGGAGAGGATTGTTGTCGTTCTTCGCCCAATCTTCGGCCGGATTTCAGGGAAGTGATTGCTAAGATTGAAGAAATCGGAAGAATTGAGATGAATTAA 993 50.86 MLKLILPLASATLFLLLLITIFLLRLKLSKNHDIEKSSTTRNNNNTKTDHTPPPPPPELTTFEGGEDLTIDEILEAPGEVIGKSHYGTLYKAVLQTTQTIRLLRFLRPAAAGCDDQHDLVRLLGSVRHPNLVPLLGFYAGGRGEKLLVHPFYEHGNLAEFITDKESKNGVVICKIAIGIARALHHLHNGLQKPIPHGNLNSKNVLLDQNFHPHVSDFGLHLLLNSPATRQMLQLSASSGYKAPELINMTDADELTDVYSYGKILLELLMSSKDPTVRNPAATGDSGVSQEPILQCLVQIGEDCCRSSPNLRPDFREVIAKIEEIGRIEMN* 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3151947 3154846 - CsaV3_5G004850.1 Csa05g00485 528872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00485 330 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 287 325 - -
Csa05g00485 330 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 2 279 - -
Csa05g00485 330 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 287 325 - -
Csa05g00485 330 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 2 279 - -
Csa05g00485 330 Pfam Protein tyrosine and serine/threonine kinase 79 320 IPR001245 GO:0004672|GO:0006468
Csa05g00485 330 Gene3D Transferase(Phosphotransferase) domain 1 69 330 - -
Csa05g00485 330 SUPERFAMILY Protein kinase-like (PK-like) 78 322 IPR011009 -
Csa05g00485 330 MobiDBLite consensus disorder prediction 35 57 - -
Csa05g00485 330 ProSiteProfiles Protein kinase domain profile. 75 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00485 Csa-Chr5:3151947 Csa07g01484 Csa-Chr7:15185546 1.39E-52 dispersed
Csa04g00416 Csa-Chr4:2548355 Csa05g00485 Csa-Chr5:3151947 5.67E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78218 PF07714 PK_Tyr_Ser-Thr 1.30E-26 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00485 - - csv:101217438 587.8