Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00496 ATGGCTCAAAAGCTTCATTTTTCCATCATTCTTTTTTCTATGTTCATCCTCTCATCAAGTTCCCTACCTTTCTCAACCAAAACTAACAACAAAGCCATCGAGTTATGGTGCAGCCGAACCCCATATCCCGACGTATGCAAACACTTCTTCAATAACGGTGAATTCGACCCCAGAAATCTCTTAGATATCAAAAAAGCAGCTCTCAAAATCGCCATGGAAAGAGCTATGAAAACCGAAACCCTCACAAAAGCCTTGGGCCAAAAATGCCGCAACAAGAAAGAAAGAGCTGCATGGGCTGACTGTTTGGAGCTTTACCAAACCACAATCCTCCACCTCAACAAAACCTTCTCCGACAAAAATTGCTCTAACTTTGATATCCAAACATGGCTCAGCTCCGCCTTGACCAACCTCCACACGTGTCGTGCTGGGTTCGTTGACCTCGGGATCAAAGATTACGGCGTAGTCTTCCCTTTTTTGGAGAACAATAATATCACAAAACTTATAAGTAATAGTTTGGCTATGAATAATTGTTCTGAGAGCGATGAGGGGAATACGAGTGATGAAGGATTTCCGAAGTGGCTTCATGGTGGCGACCGACGGTTGTTGCAGGCAGCGGAGCCTAAGGCAGATTTGGTGGTGGCGCAGGACGGGTCAGGAAATTATAAGACTGTGCAAGCAGCAGTGGATGCGGCGGGGAAGAGGAAAGGGAGTGGGAGATTTGTGATACGTGTAAAGAAAGGAGTCTATAAGGAGAATGTAGTGATAAAAGTGAAGAATTTGATGCTTGTTGGAGATGGATTGAAATATACAATTATTACTGGGAGTAGAAGTGTTGGTGGTGGTTCTACTACTTTCAACTCTGCTACTGTTGCTGTGACCGGTGAACGTTTCATTGCTCGTGGGATCACATTCCGCAACACCGCCGGACCCCAAAACCACCAAGCGGTCGCCCTTCGGTCAGGCGCCGATCTCTCAGTCTTCTTCCGGTGCGGCTTTGAAGGATACCAAGACACTCTCTACGTCCATTCACAAAGACAATTCTACAGAGAATGCTACATATACGGCACAGTTGATTTCATTTTCGGCAACTCAGCCGTAGTTCTCCAAAACTGCATGATCTACGCAAGAAAACCAATGCAAGGGCAACAATGCGTTGTCACAGCCCAAGGCCGAACCGACCCAAACCAAAACACAGGGATCTCAATCCACAACTCGAGAGTGATGGCTACAGACGACCTAAAACCGGTTATCAAGTCGGTTAGAACGTATTTGGGTAGGCCATGGAAGGAGTACTCGAGAACGGTTTACTTGCAAAGCTTCATGGATAGCTTGGTGAATCCAGCAGGGTGGTTGGAATGGAGTGGTAATTTTGCATTGAATACATTGTATTATGGAGAGTTCAAGAATTCTGGGCCTGGTTCTTCAACTGCTAATAGAGTGAAATGGAAGGGTTATAGAGTGATAACAAGTGCAAGTGAAGCAGCTAAATTCACTGTTGGGAGTTTTATTGCTGGGAACTCATGGTTGCCAGGAACTGGAGTCCCATTCACTGCTGGGCTTTGA 1563 45.75 MAQKLHFSIILFSMFILSSSSLPFSTKTNNKAIELWCSRTPYPDVCKHFFNNGEFDPRNLLDIKKAALKIAMERAMKTETLTKALGQKCRNKKERAAWADCLELYQTTILHLNKTFSDKNCSNFDIQTWLSSALTNLHTCRAGFVDLGIKDYGVVFPFLENNNITKLISNSLAMNNCSESDEGNTSDEGFPKWLHGGDRRLLQAAEPKADLVVAQDGSGNYKTVQAAVDAAGKRKGSGRFVIRVKKGVYKENVVIKVKNLMLVGDGLKYTIITGSRSVGGGSTTFNSATVAVTGERFIARGITFRNTAGPQNHQAVALRSGADLSVFFRCGFEGYQDTLYVHSQRQFYRECYIYGTVDFIFGNSAVVLQNCMIYARKPMQGQQCVVTAQGRTDPNQNTGISIHNSRVMATDDLKPVIKSVRTYLGRPWKEYSRTVYLQSFMDSLVNPAGWLEWSGNFALNTLYYGEFKNSGPGSSTANRVKWKGYRVITSASEAAKFTVGSFIAGNSWLPGTGVPFTAGL* 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3205369 3207366 - CsaV3_5G004960.1 Csa05g00496 528883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00496 520 ProSitePatterns Pectinesterase signature 2. 353 362 IPR033131 -
Csa05g00496 520 CDD PMEI-like_3 35 176 - -
Csa05g00496 520 Pfam Plant invertase/pectin methylesterase inhibitor 32 174 IPR006501 GO:0004857
Csa05g00496 520 PANTHER PECTINESTERASE 7 519 - -
Csa05g00496 520 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 177 IPR035513 -
Csa05g00496 520 TIGRFAM PME_inhib: pectinesterase inhibitor domain 9 176 IPR006501 GO:0004857
Csa05g00496 520 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 177 IPR035513 -
Csa05g00496 520 Gene3D - 204 520 IPR012334 -
Csa05g00496 520 SUPERFAMILY Pectin lyase-like 207 519 IPR011050 -
Csa05g00496 520 ProSitePatterns Pectinesterase signature 1. 236 255 IPR018040 -
Csa05g00496 520 PANTHER PECTINESTERASE 7 519 - -
Csa05g00496 520 SMART PMEI_2 28 174 IPR006501 GO:0004857
Csa05g00496 520 Pfam Pectinesterase 210 506 IPR000070 GO:0030599|GO:0042545
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g01619 Csa05g00496 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00987 Csa-Chr3:8009428 Csa05g00496 Csa-Chr5:3205369 0 dispersed
Csa03g01619 Csa-Chr3:12092582 Csa05g00496 Csa-Chr5:3205369 0 dispersed
Csa05g00496 Csa-Chr5:3205369 Csa07g02304 Csa-Chr7:21412382 1.75E-160 dispersed
Csa05g00496 Csa-Chr5:3205369 Csa05g02010 Csa-Chr5:23451164 9.61E-171 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00496 K01051 - csv:101216005 1021.15