Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00500 ATGCTTTGGCTCTCTTATAAAAACAAAGCTAAACCCTCCTTTTCTCTTCACAAAACACAACATTTACTCAAATTTTCATTGTCAACAGAAATGGCTTTCTCCAAAGCACTGCCCTATATTCTCCTCATCACCATGCTGTTCACCGTCCGGCCAACCACAGCGCAGTTGTGCCCGTCGTTCTACGACACCACATGTCCCAACCTACCCTCCATTGTAGAAGAGGTAGTGAGACAAGCTCTCCAAACCGATGCCCGAGCAGGCGCTAAACTCATTCGCTTTCATTTCCACGATTGTTTCGTCAATGGATGTGATGGGTCTGTTCTACTTGAAGATTCAGTCGCAGATGGTATAGATAGTGAACAAAACGCACCCGGAAACCTTGGAATCCAAGGCCAAAATATTGTCGCTGACATCAAAACTGCTGTTGAAAATGCATGTCCAAACGTTGTCTCCTGTGCTGACATCTTAGCCATTGCATCTAATTCAGCCGTCGTCTTGGCAGGAGGAAGGGGTTGGGAGGTTCAACTAGGAAGAAGAGATAGCAGAATAGCAAATAGATCAGGAGCTGTGAGTAATCTTCCAAGTCCTTTTGAACCTCTTGCAAATCTTACTGTCAAGTTTGCCAACGTTGGTCTTAATTCTACCGATCTTGTCTCTTTATCTGGGGCGCACACATTTGGTCAATCAAGATGTCGATTCTTCCAAGGACGATTGAGCAACTTTAGTGGAACGGGAATGGCTGATCCGAGTCTAGACCCAATCTATAGAGACATGCTTTTGGAGGCATGTCCTCAAGGCGGAGACAACAACCGGGTGAACCTAGACCCAACAACTCCCAATGAATTTGACAACAACTATTTCACCAATCTCCAAGACAACCGTGGGCTTCTTACAAGCGACCAAGTACTGTTCTCCCCTCCCGGAGCTGCGACCACCGTTGACGTGGACCGCTTCGCAGCAAGCCAAGAAGTGTTCTTTGATGCTTTTGGAGCCTCCATGATCAAGATGGGGAATATTATGCCATTGACTACAATTGATGGGGAGATACGTTTAACTTGTTCTAGGATTAATCCTTTGCCTACTCTTGCTGATATGTAA 1098 45.72 MLWLSYKNKAKPSFSLHKTQHLLKFSLSTEMAFSKALPYILLITMLFTVRPTTAQLCPSFYDTTCPNLPSIVEEVVRQALQTDARAGAKLIRFHFHDCFVNGCDGSVLLEDSVADGIDSEQNAPGNLGIQGQNIVADIKTAVENACPNVVSCADILAIASNSAVVLAGGRGWEVQLGRRDSRIANRSGAVSNLPSPFEPLANLTVKFANVGLNSTDLVSLSGAHTFGQSRCRFFQGRLSNFSGTGMADPSLDPIYRDMLLEACPQGGDNNRVNLDPTTPNEFDNNYFTNLQDNRGLLTSDQVLFSPPGAATTVDVDRFAASQEVFFDAFGASMIKMGNIMPLTTIDGEIRLTCSRINPLPTLADM* 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3226466 3228627 + CsaV3_5G005000.1 Csa05g00500 528887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00500 365 Gene3D - 60 357 - -
Csa05g00500 365 PANTHER PEROXIDASE 72-RELATED 47 357 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa05g00500 365 CDD secretory_peroxidase 55 356 IPR033905 GO:0004601|GO:0042744
Csa05g00500 365 PANTHER PEROXIDASE 58 47 357 - -
Csa05g00500 365 Pfam Peroxidase 72 313 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa05g00500 365 PRINTS Haem peroxidase superfamily signature 216 231 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa05g00500 365 PRINTS Haem peroxidase superfamily signature 275 290 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa05g00500 365 PRINTS Haem peroxidase superfamily signature 87 101 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa05g00500 365 PRINTS Haem peroxidase superfamily signature 168 180 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa05g00500 365 PRINTS Haem peroxidase superfamily signature 150 167 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa05g00500 365 PRINTS Plant peroxidase signature 65 84 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa05g00500 365 PRINTS Plant peroxidase signature 289 306 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa05g00500 365 PRINTS Plant peroxidase signature 149 159 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa05g00500 365 PRINTS Plant peroxidase signature 168 183 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa05g00500 365 PRINTS Plant peroxidase signature 89 109 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa05g00500 365 PRINTS Plant peroxidase signature 130 143 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa05g00500 365 PRINTS Plant peroxidase signature 215 227 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa05g00500 365 PRINTS Plant peroxidase signature 273 288 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa05g00500 365 PRINTS Plant peroxidase signature 331 344 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa05g00500 365 ProSiteProfiles Plant heme peroxidase family profile. 55 357 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa05g00500 365 Gene3D Peroxidase, domain 2 194 336 - -
Csa05g00500 365 SUPERFAMILY Heme-dependent peroxidases 55 358 IPR010255 GO:0004601|GO:0006979|GO:0020037
Csa05g00500 365 ProSitePatterns Peroxidases proximal heme-ligand signature. 216 226 IPR019793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01351 Csa-Chr4:13727744 Csa05g00500 Csa-Chr5:3226466 2.57E-130 dispersed
Csa04g01358 Csa-Chr4:13768635 Csa05g00500 Csa-Chr5:3226466 1.58E-136 dispersed
Csa04g01359 Csa-Chr4:13774922 Csa05g00500 Csa-Chr5:3226466 8.39E-144 dispersed
Csa05g00500 Csa-Chr5:3226466 Csa04g01360 Csa-Chr4:13778724 4.88E-96 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00500 K00430 - csv:101215530 673.7