Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00503 ATGAGAAAATTAGTTTCAAATGAAAGTTCAGTAGTTGTGTTATGGATGATGATGCTTCTTCTACTTCTCCAATTTTGTTTCTCCATAACTGCTGCTTGTATCCAAAAGGAACGTGAAGCTCTCCTTCGATTCAAGAATAGTTTTTACGAAGATCCTTTCCATCGCTTGGCTTCATGGAATGGAACTGATTGTTGCAATTGGAATGGAGTGGGTTGCAATCAAACTACTGGATATGTTACTATCATTGATCTTCGGCAGGATTATAATCAGGTTGACTCGTATGAATCTTTATCTAGCAATTTCATTGACTCTAGTTTGTTAGAGTTGAAATACTTAAATCACTTGGATTTAAGTGGAAACTATTTCAACCATACTCAAATCCCAAACTTCTTAGGTTCAATGCTTGAATTAACATATCTTAATCTATCAAGGACATCACTTATCGGCAAAATTCCTCCTCATTTAGGAAATCTTTCTAAATTGGAAATTCTTGATTTAGATAGAGATTATTATGAATTTGATGCCACAAGATGGGTACCACTCAATGGCGATATTGAATGGATATCTCATCTTTCATCTTTACATACTCTTCACTTGAGTGGAATGAACTTTTCAAATGCTATAAATTTGATGCAAGTGATAAGTTCCCTTCCATCATTGTCCTCCTTAAGACTTCGTTCTTGCAGTCTTCAAAACAACGATTTTTCTTTGGGTTCCTGGTTGAATTATTCATCATTTATTTCTAGAGTTCAACTTCTAGACTTACATGATAATCAACTAAGTGGTCAAATTCCTACGATTTTTCAGAATATGACTTCCTTGAAATACTTAGACCTTTCATTAAATAATTTCACTGCTATTTTTGAAGGTGGAATTTCTACCTTCATTGAAAATAATTGTGGCTTAAAAGTACTTGATTTATCATTGAACTTTTACTTTGGTACCGATGATGTATTTGAAAGTAGTTATGAGAATGAAACTATGGGCTGCGATCTTCAAGTGCTTAATTTAAGATATACATCTTTGAAAACCAAAATTCCAAATTGGTTAGAAAAGTTAAAAAACTTGCAGACCATTGATCTTCAATCTAGTCAGATTTATGGTCTAATTCCTACTTCACTTGGAAATTTATCAAATCTTAAGTATTTAGATCTTTCAATCAATAATTTAACTGGAACAATTCCAGCCTCATTTGAAAGATTACTAAATTTGGAGGTACTAGACGTATCAGAAAACTCGCTTAAAGGTGTTTTAACGGAAGCTAGTTTTGCTAACCTCTATCGGTTGCATACTTTAAACTTAGGCTACAATGAGAATCTTTCGTTGGAGATAAAAGCTAATTGGAATCCTCCTTTTCAATTATTATTTTTTGATGCTTCGAGGATTTGTTGTTTTGGAAGTGAGTTTCCACAATGGCTTCAGACGCAAAAGGCACTGGTTGGTTTGAGTTTATCCAACACAAATCTCTCAATTAGTTCTATACCAACATGGTTCACACCACAAAATCTCATCACTTTGAATCTTTCAAACAACCAAATCATGGGGCCACTTCCTACCAACATTGGAGATCAAATGCCAAAGTTGCAAAGGTTGCGTTTGAATGATAATCTAATCGATGGGTCTTTACCACGTTCAATCTGCAGGTGGAAGAATTTGAATGTTTTGAATCTTTCAAACAATAGACTATCTGGAATGATTGAAGGTTGTTTTCTCAATCCAAACTTGTATCTCCTAGATTTGTCTTCCAACAACTTCTCAGGGATCTTCCCATATTCACATGAAAATTTGTCTTATATTGAACAAGTATACTTGAGAAACAATAATTTTGAAGGATCCATGCCAATAGTATTGAAGAATGCCAAATCTTTAGAAATCTTAGATCTTACAGGAAACAAATTTTCTGGAACCATCCCCACATGGGTAGGAGAGAATCTTGAAAGTTTGCAATTTCTAATACTCCGAGATAATTTGTTCAATATAAATTGCAAATTTTGGATCTTGCACACAACCAATTGGAAGGAAGTATCCCCCCAAATCTTAGCAACTTCCACCGAATGA 2058 34.06 MRKLVSNESSVVVLWMMMLLLLLQFCFSITAACIQKEREALLRFKNSFYEDPFHRLASWNGTDCCNWNGVGCNQTTGYVTIIDLRQDYNQVDSYESLSSNFIDSSLLELKYLNHLDLSGNYFNHTQIPNFLGSMLELTYLNLSRTSLIGKIPPHLGNLSKLEILDLDRDYYEFDATRWVPLNGDIEWISHLSSLHTLHLSGMNFSNAINLMQVISSLPSLSSLRLRSCSLQNNDFSLGSWLNYSSFISRVQLLDLHDNQLSGQIPTIFQNMTSLKYLDLSLNNFTAIFEGGISTFIENNCGLKVLDLSLNFYFGTDDVFESSYENETMGCDLQVLNLRYTSLKTKIPNWLEKLKNLQTIDLQSSQIYGLIPTSLGNLSNLKYLDLSINNLTGTIPASFERLLNLEVLDVSENSLKGVLTEASFANLYRLHTLNLGYNENLSLEIKANWNPPFQLLFFDASRICCFGSEFPQWLQTQKALVGLSLSNTNLSISSIPTWFTPQNLITLNLSNNQIMGPLPTNIGDQMPKLQRLRLNDNLIDGSLPRSICRWKNLNVLNLSNNRLSGMIEGCFLNPNLYLLDLSSNNFSGIFPYSHENLSYIEQVYLRNNNFEGSMPIVLKNAKSLEILDLTGNKFSGTIPTWVGENLESLQFLILRDNLFNINCKFWILHTTNWKEVSPQILATSTE* 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3246324 3249925 + CsaV3_5G005030.1 Csa05g00503 528890

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00503 685 SUPERFAMILY L domain-like 329 672 - -
Csa05g00503 685 ProSiteProfiles Leucine-rich repeat profile. 551 572 IPR001611 GO:0005515
Csa05g00503 685 Gene3D Ribonuclease Inhibitor 322 450 IPR032675 -
Csa05g00503 685 Pfam Leucine Rich Repeat 137 158 IPR001611 GO:0005515
Csa05g00503 685 Gene3D Ribonuclease Inhibitor 127 172 IPR032675 -
Csa05g00503 685 Gene3D Ribonuclease Inhibitor 30 126 IPR032675 -
Csa05g00503 685 PANTHER LRR RECEPTOR-LIKE KINASE 502 572 - -
Csa05g00503 685 PANTHER LRR RECEPTOR-LIKE KINASE 12 544 - -
Csa05g00503 685 PANTHER LRR RECEPTOR-LIKE KINASE 550 659 - -
Csa05g00503 685 Gene3D Ribonuclease Inhibitor 463 677 IPR032675 -
Csa05g00503 685 SMART LRR_typ_2 109 134 IPR003591 -
Csa05g00503 685 SMART LRR_typ_2 525 549 IPR003591 -
Csa05g00503 685 SMART LRR_typ_2 271 290 IPR003591 -
Csa05g00503 685 SMART LRR_typ_2 401 425 IPR003591 -
Csa05g00503 685 SMART LRR_typ_2 377 400 IPR003591 -
Csa05g00503 685 SMART LRR_typ_2 247 270 IPR003591 -
Csa05g00503 685 SMART LRR_typ_2 550 572 IPR003591 -
Csa05g00503 685 SMART LRR_typ_2 353 376 IPR003591 -
Csa05g00503 685 Gene3D Ribonuclease Inhibitor 235 321 IPR032675 -
Csa05g00503 685 PRINTS Leucine-rich repeat signature 380 393 - -
Csa05g00503 685 PRINTS Leucine-rich repeat signature 401 414 - -
Csa05g00503 685 Pfam Leucine rich repeat 551 609 IPR001611 GO:0005515
Csa05g00503 685 Pfam Leucine rich repeat 355 414 IPR001611 GO:0005515
Csa05g00503 685 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 12 544 - -
Csa05g00503 685 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 502 572 - -
Csa05g00503 685 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 550 659 - -
Csa05g00503 685 Gene3D Ribonuclease Inhibitor 177 234 IPR032675 -
Csa05g00503 685 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Csa05g00503 685 SUPERFAMILY L domain-like 32 312 - -
Csa05g00503 685 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00503 - - - csv:101219889 1320.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00503 Csa-Chr5:3246324 Csa05g00505 Csa-Chr5:3261414 2.73E-16 dispersed
Csa05g00503 Csa-Chr5:3246324 Csa05g00504 Csa-Chr5:3253872 2.68E-10 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g703 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00503 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000277 0 6 1 0 0 5 0 8 6 10 5 6 1 10 13 10 5 0 1 5 7 4 4 5 7 8 5 6 5 0 143
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00503 Csa_Chr05 FPKM 18.176218 19.391047 4.502147 3.940521 4.967276 5.065259 5.137295 5.659938 5.893111 5.334305