Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00519 ATGTTCTTCTGCAAAATGGCCCCTACTTCCCTCGCTTTCCGCTGCCGACAATCCATCACCCCAACTGCAATCCGATCCTACGTTGCCGAGTTCATCTCCACCTTCTTCTACGTCTTCTCTGTCGTTGGAGCATCCATGGCCTCCCAGAAGTATATGCCAGGCATTACTACGGCAGACCTATCGAGTCTTCTGGTGGCCGCTATTGCCAATGCCTTTGCTTTGGCTTCAGCCGTATACATTGCCGCCAACATCTCCGGTGGACACGTCAACCCGGCAGTGACGTTTGGAATGGCCGTTGGTGGCCATGTCAGCGTTCCCACTGCTCTCTTTTACTGGTTTGCTCAAATGCTTGCCTCTGTCATGGCCTGCATTATTCTTAGAGCCACCATTGTTGGACAGCACGTTCCAAGCTATGCCATTGCCGATGAGATGACGGGGTTCGGAGCGTCGGTGGTGGAAGGTGTATTGACATTTGCGCTTGTATACACCGTCTTTGCCGCCAGCAATCCGAGACGAGGTCCGTGCAATGCGATTGGTGCGGTGATGATTGGGCTGATTGCTGGAGCCAATGTGCTGGCTGCGGGGCCATTTTCGGGTGGATCGGTGAACCCGGCGTGTGCATTTGGATCGGCGATTGTGGCGGGGAGTTTCAAGAACCAGGCAGTGTATTGGGTTGGGCCATTGATTGGGGCGGCTTTGGCTGGAATTGTTCATGATAATGTGGTTTTTCCGATTGAAAATGTAGATTCATTCAGAGGGGTTTCTGAGGCTGTTATCGCTTGA 783 52.87 MFFCKMAPTSLAFRCRQSITPTAIRSYVAEFISTFFYVFSVVGASMASQKYMPGITTADLSSLLVAAIANAFALASAVYIAANISGGHVNPAVTFGMAVGGHVSVPTALFYWFAQMLASVMACIILRATIVGQHVPSYAIADEMTGFGASVVEGVLTFALVYTVFAASNPRRGPCNAIGAVMIGLIAGANVLAAGPFSGGSVNPACAFGSAIVAGSFKNQAVYWVGPLIGAALAGIVHDNVVFPIENVDSFRGVSEAVIA* 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3336038 3337392 + CsaV3_5G005190.1 Csa05g00519 528906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00519 260 Pfam Major intrinsic protein 21 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g00519 260 PANTHER AQUAPORIN TIP5-1-RELATED 10 259 - -
Csa05g00519 260 Gene3D Glycerol uptake facilitator protein. 11 250 IPR023271 -
Csa05g00519 260 PANTHER AQUAPORIN-8 10 259 IPR034294 -
Csa05g00519 260 ProSitePatterns MIP family signature. 88 96 IPR022357 -
Csa05g00519 260 PRINTS Major intrinsic protein family signature 25 44 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g00519 260 PRINTS Major intrinsic protein family signature 70 94 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g00519 260 PRINTS Major intrinsic protein family signature 107 126 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g00519 260 PRINTS Major intrinsic protein family signature 152 170 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g00519 260 PRINTS Major intrinsic protein family signature 184 206 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g00519 260 PRINTS Major intrinsic protein family signature 221 241 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g00519 260 SUPERFAMILY Aquaporin-like 18 246 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00519 Csa-Chr5:3336038 Csa07g02263 Csa-Chr7:21111287 2.45E-64 dispersed
Csa05g00519 Csa-Chr5:3336038 Csa06g02624 Csa-Chr6:23064934 4.65E-58 transposed
Csa05g00519 Csa-Chr5:3336038 Csa03g03313 Csa-Chr3:30151604 9.62E-58 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00519 K09873 - csv:101214078 500.36