Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa05g00519 | ATGTTCTTCTGCAAAATGGCCCCTACTTCCCTCGCTTTCCGCTGCCGACAATCCATCACCCCAACTGCAATCCGATCCTACGTTGCCGAGTTCATCTCCACCTTCTTCTACGTCTTCTCTGTCGTTGGAGCATCCATGGCCTCCCAGAAGTATATGCCAGGCATTACTACGGCAGACCTATCGAGTCTTCTGGTGGCCGCTATTGCCAATGCCTTTGCTTTGGCTTCAGCCGTATACATTGCCGCCAACATCTCCGGTGGACACGTCAACCCGGCAGTGACGTTTGGAATGGCCGTTGGTGGCCATGTCAGCGTTCCCACTGCTCTCTTTTACTGGTTTGCTCAAATGCTTGCCTCTGTCATGGCCTGCATTATTCTTAGAGCCACCATTGTTGGACAGCACGTTCCAAGCTATGCCATTGCCGATGAGATGACGGGGTTCGGAGCGTCGGTGGTGGAAGGTGTATTGACATTTGCGCTTGTATACACCGTCTTTGCCGCCAGCAATCCGAGACGAGGTCCGTGCAATGCGATTGGTGCGGTGATGATTGGGCTGATTGCTGGAGCCAATGTGCTGGCTGCGGGGCCATTTTCGGGTGGATCGGTGAACCCGGCGTGTGCATTTGGATCGGCGATTGTGGCGGGGAGTTTCAAGAACCAGGCAGTGTATTGGGTTGGGCCATTGATTGGGGCGGCTTTGGCTGGAATTGTTCATGATAATGTGGTTTTTCCGATTGAAAATGTAGATTCATTCAGAGGGGTTTCTGAGGCTGTTATCGCTTGA | 783 | 52.87 | MFFCKMAPTSLAFRCRQSITPTAIRSYVAEFISTFFYVFSVVGASMASQKYMPGITTADLSSLLVAAIANAFALASAVYIAANISGGHVNPAVTFGMAVGGHVSVPTALFYWFAQMLASVMACIILRATIVGQHVPSYAIADEMTGFGASVVEGVLTFALVYTVFAASNPRRGPCNAIGAVMIGLIAGANVLAAGPFSGGSVNPACAFGSAIVAGSFKNQAVYWVGPLIGAALAGIVHDNVVFPIENVDSFRGVSEAVIA* | 261 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 3336038 | 3337392 | + | CsaV3_5G005190.1 | Csa05g00519 | 528906 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa05g00519 | 260 | Pfam | Major intrinsic protein | 21 | 238 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa05g00519 | 260 | PANTHER | AQUAPORIN TIP5-1-RELATED | 10 | 259 | - | - | |
Csa05g00519 | 260 | Gene3D | Glycerol uptake facilitator protein. | 11 | 250 | IPR023271 | - | |
Csa05g00519 | 260 | PANTHER | AQUAPORIN-8 | 10 | 259 | IPR034294 | - | |
Csa05g00519 | 260 | ProSitePatterns | MIP family signature. | 88 | 96 | IPR022357 | - | |
Csa05g00519 | 260 | PRINTS | Major intrinsic protein family signature | 25 | 44 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa05g00519 | 260 | PRINTS | Major intrinsic protein family signature | 70 | 94 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa05g00519 | 260 | PRINTS | Major intrinsic protein family signature | 107 | 126 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa05g00519 | 260 | PRINTS | Major intrinsic protein family signature | 152 | 170 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa05g00519 | 260 | PRINTS | Major intrinsic protein family signature | 184 | 206 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa05g00519 | 260 | PRINTS | Major intrinsic protein family signature | 221 | 241 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa05g00519 | 260 | SUPERFAMILY | Aquaporin-like | 18 | 246 | IPR023271 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa05g00519 | Csa-Chr5:3336038 | Csa07g02263 | Csa-Chr7:21111287 | 2.45E-64 | dispersed | |
Csa05g00519 | Csa-Chr5:3336038 | Csa06g02624 | Csa-Chr6:23064934 | 4.65E-58 | transposed | |
Csa05g00519 | Csa-Chr5:3336038 | Csa03g03313 | Csa-Chr3:30151604 | 9.62E-58 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa05g00519 | K09873 | - | csv:101214078 | 500.36 |