Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00539 ATGGAAGAGAAAGAGGGAGGAGTGGATTTTGGGTTTGCAGTAAAAGTAAGCCAAGCTCCAGAGAGCTTCGGGATGATGGACACGAGACCTGAAAATTCAAGCACAGATGGTGAGACACCGCCGCAGCAGCCGCCGGCGAGTGTTCCAACGGCGGGGGCTGCCGATGGGAAGAAGAAAAGAGGGAGACCAAGAAAGTACGGTCCTGATGGGACTGTAGCTCCAACATTGTCACCAATGCCGATTTCGTCATCGATTCCGCTGGCGGGAGAATTTGCGGGTTGGAAACGAGGAAGAGGACGGTCAGTAGAGTCTATCAAGAAGTCGCGGAAGTTCGAGTATGAGATTCCAGGTAACAAGGTTGCCTTCTTTGCTGGAGCAGATTTCACACCTCACGTGATCACTGTTAATATTGGTGAGGATGTTAACTTGAAAGTCATGTCATTTTCTCAACAAGGATCTCGGGCTATTTGTATACTCTCTGCTAATGGTATGGTTTCGAATGTTACACTTCGGCAGTCAACATCGTCTGGGGGTACTTTAACATATGAGGGTCGATTTGAGATACTTTCATTGTCTGGATCATATATGCCTTCGGAAATTGGTGGAACAAAGAGCCGATCTGGAGGGATGAGTGTTTCTTTGGCTGGCCCAGATGGCCGAGTGATGGGCGGAGGACTTGCGGGCATGCTGATAGCAGCTGGTCCAGTGCAGGTGGTGGTGGGTAGTTTCCTGCCACCAGGTCACCAGCAGGAAAACAAACCAAGGAAGAGTAGGATGGAACCTACACTGAACGCAAGTTCTCCTCCAGCCAACATTCTTTCTGGTGAAGGGACAAATGAAGTATTTGGTGGAGTGAAGCCCATAGTCGCATCTACTCTAAATGGAGATAGAACTGCTTCTTTAGACCCAGCTTTTAAAACTCCCCAAGTTAACGACAAATCACATTTTCCACAAGAATCAAGAGGTGTTCTCAACCATTCAAACCACGAGGTTTCTTGTTAA 1002 48.1 MEEKEGGVDFGFAVKVSQAPESFGMMDTRPENSSTDGETPPQQPPASVPTAGAADGKKKRGRPRKYGPDGTVAPTLSPMPISSSIPLAGEFAGWKRGRGRSVESIKKSRKFEYEIPGNKVAFFAGADFTPHVITVNIGEDVNLKVMSFSQQGSRAICILSANGMVSNVTLRQSTSSGGTLTYEGRFEILSLSGSYMPSEIGGTKSRSGGMSVSLAGPDGRVMGGGLAGMLIAAGPVQVVVGSFLPPGHQQENKPRKSRMEPTLNASSPPANILSGEGTNEVFGGVKPIVASTLNGDRTASLDPAFKTPQVNDKSHFPQESRGVLNHSNHEVSC* 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3452950 3460882 + CsaV3_5G005390.1 Csa05g00539 528926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00539 333 MobiDBLite consensus disorder prediction 259 274 - -
Csa05g00539 333 Gene3D - 130 262 - -
Csa05g00539 333 ProSiteProfiles PPC domain profile profile. 125 266 IPR005175 -
Csa05g00539 333 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 8 302 - -
Csa05g00539 333 MobiDBLite consensus disorder prediction 27 41 - -
Csa05g00539 333 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 8 302 IPR039605 GO:0003680
Csa05g00539 333 CDD DUF296 129 243 IPR005175 -
Csa05g00539 333 Pfam Plants and Prokaryotes Conserved (PCC) domain 130 243 IPR005175 -
Csa05g00539 333 MobiDBLite consensus disorder prediction 1 81 - -
Csa05g00539 333 MobiDBLite consensus disorder prediction 300 333 - -
Csa05g00539 333 SUPERFAMILY AF0104/ALDC/Ptd012-like 127 259 - -
Csa05g00539 333 MobiDBLite consensus disorder prediction 243 278 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g01634 Csa05g00539 CCT
Csa03g01634 Csa05g00539 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00539 Csa-Chr5:3452950 Csa05g01080 Csa-Chr5:10953266 1.03E-71 dispersed
Csa06g01267 Csa-Chr6:10632891 Csa05g00539 Csa-Chr5:3452950 1.64E-22 dispersed
Csa02g00279 Csa-Chr2:1909716 Csa05g00539 Csa-Chr5:3452950 8.71E-45 transposed
Csa03g01634 Csa-Chr3:12213375 Csa05g00539 Csa-Chr5:3452950 3.85E-112 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00539 - - csv:101211908 634.024