Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa05g00539 | ATGGAAGAGAAAGAGGGAGGAGTGGATTTTGGGTTTGCAGTAAAAGTAAGCCAAGCTCCAGAGAGCTTCGGGATGATGGACACGAGACCTGAAAATTCAAGCACAGATGGTGAGACACCGCCGCAGCAGCCGCCGGCGAGTGTTCCAACGGCGGGGGCTGCCGATGGGAAGAAGAAAAGAGGGAGACCAAGAAAGTACGGTCCTGATGGGACTGTAGCTCCAACATTGTCACCAATGCCGATTTCGTCATCGATTCCGCTGGCGGGAGAATTTGCGGGTTGGAAACGAGGAAGAGGACGGTCAGTAGAGTCTATCAAGAAGTCGCGGAAGTTCGAGTATGAGATTCCAGGTAACAAGGTTGCCTTCTTTGCTGGAGCAGATTTCACACCTCACGTGATCACTGTTAATATTGGTGAGGATGTTAACTTGAAAGTCATGTCATTTTCTCAACAAGGATCTCGGGCTATTTGTATACTCTCTGCTAATGGTATGGTTTCGAATGTTACACTTCGGCAGTCAACATCGTCTGGGGGTACTTTAACATATGAGGGTCGATTTGAGATACTTTCATTGTCTGGATCATATATGCCTTCGGAAATTGGTGGAACAAAGAGCCGATCTGGAGGGATGAGTGTTTCTTTGGCTGGCCCAGATGGCCGAGTGATGGGCGGAGGACTTGCGGGCATGCTGATAGCAGCTGGTCCAGTGCAGGTGGTGGTGGGTAGTTTCCTGCCACCAGGTCACCAGCAGGAAAACAAACCAAGGAAGAGTAGGATGGAACCTACACTGAACGCAAGTTCTCCTCCAGCCAACATTCTTTCTGGTGAAGGGACAAATGAAGTATTTGGTGGAGTGAAGCCCATAGTCGCATCTACTCTAAATGGAGATAGAACTGCTTCTTTAGACCCAGCTTTTAAAACTCCCCAAGTTAACGACAAATCACATTTTCCACAAGAATCAAGAGGTGTTCTCAACCATTCAAACCACGAGGTTTCTTGTTAA | 1002 | 48.1 | MEEKEGGVDFGFAVKVSQAPESFGMMDTRPENSSTDGETPPQQPPASVPTAGAADGKKKRGRPRKYGPDGTVAPTLSPMPISSSIPLAGEFAGWKRGRGRSVESIKKSRKFEYEIPGNKVAFFAGADFTPHVITVNIGEDVNLKVMSFSQQGSRAICILSANGMVSNVTLRQSTSSGGTLTYEGRFEILSLSGSYMPSEIGGTKSRSGGMSVSLAGPDGRVMGGGLAGMLIAAGPVQVVVGSFLPPGHQQENKPRKSRMEPTLNASSPPANILSGEGTNEVFGGVKPIVASTLNGDRTASLDPAFKTPQVNDKSHFPQESRGVLNHSNHEVSC* | 334 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 3452950 | 3460882 | + | CsaV3_5G005390.1 | Csa05g00539 | 528926 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa05g00539 | 333 | MobiDBLite | consensus disorder prediction | 259 | 274 | - | - | |
Csa05g00539 | 333 | Gene3D | - | 130 | 262 | - | - | |
Csa05g00539 | 333 | ProSiteProfiles | PPC domain profile profile. | 125 | 266 | IPR005175 | - | |
Csa05g00539 | 333 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 | 8 | 302 | - | - | |
Csa05g00539 | 333 | MobiDBLite | consensus disorder prediction | 27 | 41 | - | - | |
Csa05g00539 | 333 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 8 | 302 | IPR039605 | GO:0003680 | |
Csa05g00539 | 333 | CDD | DUF296 | 129 | 243 | IPR005175 | - | |
Csa05g00539 | 333 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 130 | 243 | IPR005175 | - | |
Csa05g00539 | 333 | MobiDBLite | consensus disorder prediction | 1 | 81 | - | - | |
Csa05g00539 | 333 | MobiDBLite | consensus disorder prediction | 300 | 333 | - | - | |
Csa05g00539 | 333 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 127 | 259 | - | - | |
Csa05g00539 | 333 | MobiDBLite | consensus disorder prediction | 243 | 278 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Csa03g01634 | Csa05g00539 | CCT | |
Csa03g01634 | Csa05g00539 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa05g00539 | Csa-Chr5:3452950 | Csa05g01080 | Csa-Chr5:10953266 | 1.03E-71 | dispersed | |
Csa06g01267 | Csa-Chr6:10632891 | Csa05g00539 | Csa-Chr5:3452950 | 1.64E-22 | dispersed | |
Csa02g00279 | Csa-Chr2:1909716 | Csa05g00539 | Csa-Chr5:3452950 | 8.71E-45 | transposed | |
Csa03g01634 | Csa-Chr3:12213375 | Csa05g00539 | Csa-Chr5:3452950 | 3.85E-112 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa05g00539 | - | - | csv:101211908 | 634.024 |