Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa05g00547 | ATGTCCGAATCATTTCCCTCCGATCATGATCCCTCTCCCTCCGCCGGAAAGCTCCGCAAGATCCCTCCCATCCCTGTTCGCCGCGATTCCAAATCCAACGCTGGAGACTCCGATTCCGATTCCGATGCCGATTCCGATTCCGATCTTGAACATGACCTTACCGAGGAATTTCCTCTTCAACCTGACGATTCCTGCATCATTATGGCATCATCTCTTGGATTGAATCACATTCGGACGAGGTCTGCTCCTTTGCCGCTACGGACCTCTGCTGTTGGCACGCCTTCCAATTTGGGAGATAATTCCAGAAATAATGTCACCGAGGGGACCAATTCTGAGCCAAAAGTTTCCTCCACTGAACTAGGGAAAAGAGTTCTGTGGAGTCAATCGAAATCGTTCAGACATCCGCCATCTGTGAATCATGATTTTGAGGGTAATCATGTAGCCTTTGGAAAGGAAATTCAGTCTCCACGGTTTCGTGCCATATTGCGTGTTACTAGTGGAAGAAGGAAGAGAACCCCGGATATCAAAAGCTTCTCTCACGAGCTCAATTCCAAGGGAGTTCGCCCTTTTCCACTTTGGAAACCTCGAGCACTTGGACATTTGGAAGAAATCATGGTGGCTATCAGAGAAAAATTTGACAGATTGAAGGATGATGTTAATAACGAACTGGGCATTTTTGCTGGAGATCTCGTAGATTTACTTGACAAGACAGACCACTCTCAGCCTGAACTAAGAAAGGGTTTAGAGGACTTACTGGTGATGTCCCGGAAATGTGCAACAATATCACCTGCAGATTTCTGGGCGGAAGGAGAAGGGATTGTCCAAAGTCTAGATGACCGGCGGCAGGAGCTGTCATTAGGGGTTCTTAAGCAAGCCCACACCCGTATACTCTTCATCCTGACACGATGTACTCGGCTGATTCAGTTCCGAAAGGAGAGTGGTTATGAAGATGACCACATTCTGGGTTTTCATCAACTCAGTGATCTAGGAATTTATCCAGAGAAAATTAGGCAGCTCGAACAACTTAACTTTGGTGATCCATTGATTGTGAAAGAAGAAATTCGGCAGCAGCTAAATTTGGTTGCTAAGGATCAAGCCAGTCACATTGTGAAGCAAGATTTAGGTCAAAATTTTATCAATAGTGCTGGAAATGTTGAGCTGGGCTCTGCTTTAAGTGTTGATTCATCTACAAGTATGAGGATGGCATCCTGGAAAAAGCTACCGTCAGCTGCTGAGAAGAACCGGAAAGACGCTGACTCTACTGGAACACCTTCCAGGGATAAACTTGAACTGTTGCATGAAAATGAAGCTAAAACTGGGAGCAACAACCAATTAGATACCCCATCTAATCATGTTGCGCATTTGGAAGCACCTCCTAAAGAACAAAAACTATCTTGGGGAATATGGGGTTATCATCAAAATGCCACTTTTGAAAATTTAATGATTTGTCGGATTTGTGAGGTTGAGATTCCGACCATTCATGTTGAGGAACATTCTCGAATATGTACAATTGCTGATAGGTGTGATTTGAAAGGTTTAACAGTGAATGAGCGCCTCGACCGGGTTGCTACAGCTCTTGAAAAGATACTAGAGTCTTGGACGCCTAAAAGTACACCAAGAAGTAGTGATACTTCCTGCGGAAATTTTGATACCATTAAGGTTTCTACATCAAGTATGCAAGAAGAGGTTTTTGTTGAGCTGTCATCCAGAGGAGTAAATTCGTCATGTCGAAACTCTGAAGATCTGCTTGATTCCCTTCCTGTTACTGGCAGCAACTCCTTTATAGAAAGTCAGGATATTTTTCCTGATTCATCATTCAATCGGCAATTTATTTTCACACCAGATTACAGTACGAAATCAACTTCAGCTGGAACTCTTACACCAAGATCACCTCTTTTAACCCCCAGATCCAGCCAGATTGAATTGTTGTTGCATGGGCGAAAAGCAATATCTGAACTTGAAAATTATCAGCAGATTTTCAAATTATTGGATATTGTTCGTTCCATTGCAAATGTTAACGACTCTGGTTATGGTGCATTGGAGTCTATGCTTGATCGATTAGAGGACCTTAAATATGCAATCCAGGATAGGAAGGTGGATGCCCTTGTTGTGGAGACTTTTGGAAGGCGCATAGAGAAGCTATTGCAGGAAAAATATGTACATCTTTGTGGGCAAATTGAAGATGATAAATTAGAATCTTCACATGGCATGGTTGATGAAGAGAGTCCAGTGGAAGATGATACTGTCCGTAGTTTGCGTGCAAGTCCTGTCAACAAATGCTCAAAAGATCGTACATCTATTGCAGATTTTGAAATAATTAAGCCAATTAGTAGAGGGGCATATGGCCGAGTTTTTCTTGCCAGAAAAAGAGCAACTGGAGACTTGTTTGCAATAAAGGTTTTAAAGAAGGCTGATATGATTCGCAAGAATGCAGTTGAAAGTATTTTGGCTGAACGCAACATTCTTATCTCAGTTCGCAACCCTTTTGTGGTCCGCTTTTTCTACTCTTTCACATGTAGGGAAAATCTGTATCTGGTCATGGAGTACTTAAATGGTGGTGATATTTATTCCTTACTGAGAAACCTAGGGTGCTTAGACGAAGATATGGCTCGTATTTATATCGCTGAAATTGTTCTAGCTTTGGAGTATTTGCACTCCTTAAATGTGATTCACAGAGACTTAAAGCCAGATAACTTATTGATCGGTCAAGATGGTCACATTAAGTTGACAGACTTTGGGCTCTCCAAGATTGGTCTTATCAATAGTACAGATGATTTCTCAGGTCCATCAATCAGTGGACCTGACTCACTTGGAGACAATGGACCAGCATCTTTGCCAAAAAGAGAACACAGACAAAAGCAGTCAGTAGTCGGTACTCCAGATTATTTGGCTCCTGAGATACTTCTGGGCATGGGACATGGTGTAACTGCGGATTGGTGGTCTGTTGGAGTAATTCTTTTTGAGATGCTTGTAGGAATACCGCCGTTCAATGAAGAGAATCCACAGCAAATTTTTGATAATATCATTAACAGAGACATACCATGGCCCAGGGTGCCTGACGAGATGAGTTATGAAGCCCACGATTTGATTGACAAATTGCTGACTGACAATGCAGTTCAAAGACTGGGAGCTACTGGAGCCAGGGAGGTGAAAGAGCATCCTTTCTTCAAAGATGTTAACTGGGAAACCCTTGAAAGGCAGAAGGCCATGTTTATACCATCAGCAGAGCCACAGGATACAAGTTATTTCATGAGCCGTTATATATGGAATCCAGAAGATGAGGATTTTAATGGTGGAAGTGATTTTGATGATCATGATTTGACTGATACTTGCAGCAGTAGTTCATTTAGTAACCTACAAGATGAAGACGGAGACGAGTGTGGTAGTTTGACTGACTTCTGTACATCAGCCCTTTCTGTGAAGTACTCGTTCAGCAATTTCTCTTTCAAGAATTTATCACAACTGGCTTCCATCAATTACGATTTGGTTGTGAAGAGCAGTCAAAATTCGCCAGATGTATCAAAACCATCCGTTCCTTGA | 3540 | 42.4 | MSESFPSDHDPSPSAGKLRKIPPIPVRRDSKSNAGDSDSDSDADSDSDLEHDLTEEFPLQPDDSCIIMASSLGLNHIRTRSAPLPLRTSAVGTPSNLGDNSRNNVTEGTNSEPKVSSTELGKRVLWSQSKSFRHPPSVNHDFEGNHVAFGKEIQSPRFRAILRVTSGRRKRTPDIKSFSHELNSKGVRPFPLWKPRALGHLEEIMVAIREKFDRLKDDVNNELGIFAGDLVDLLDKTDHSQPELRKGLEDLLVMSRKCATISPADFWAEGEGIVQSLDDRRQELSLGVLKQAHTRILFILTRCTRLIQFRKESGYEDDHILGFHQLSDLGIYPEKIRQLEQLNFGDPLIVKEEIRQQLNLVAKDQASHIVKQDLGQNFINSAGNVELGSALSVDSSTSMRMASWKKLPSAAEKNRKDADSTGTPSRDKLELLHENEAKTGSNNQLDTPSNHVAHLEAPPKEQKLSWGIWGYHQNATFENLMICRICEVEIPTIHVEEHSRICTIADRCDLKGLTVNERLDRVATALEKILESWTPKSTPRSSDTSCGNFDTIKVSTSSMQEEVFVELSSRGVNSSCRNSEDLLDSLPVTGSNSFIESQDIFPDSSFNRQFIFTPDYSTKSTSAGTLTPRSPLLTPRSSQIELLLHGRKAISELENYQQIFKLLDIVRSIANVNDSGYGALESMLDRLEDLKYAIQDRKVDALVVETFGRRIEKLLQEKYVHLCGQIEDDKLESSHGMVDEESPVEDDTVRSLRASPVNKCSKDRTSIADFEIIKPISRGAYGRVFLARKRATGDLFAIKVLKKADMIRKNAVESILAERNILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDIYSLLRNLGCLDEDMARIYIAEIVLALEYLHSLNVIHRDLKPDNLLIGQDGHIKLTDFGLSKIGLINSTDDFSGPSISGPDSLGDNGPASLPKREHRQKQSVVGTPDYLAPEILLGMGHGVTADWWSVGVILFEMLVGIPPFNEENPQQIFDNIINRDIPWPRVPDEMSYEAHDLIDKLLTDNAVQRLGATGAREVKEHPFFKDVNWETLERQKAMFIPSAEPQDTSYFMSRYIWNPEDEDFNGGSDFDDHDLTDTCSSSSFSNLQDEDGDECGSLTDFCTSALSVKYSFSNFSFKNLSQLASINYDLVVKSSQNSPDVSKPSVP* | 1180 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 3529216 | 3541038 | + | CsaV3_5G005470.1 | Csa05g00547 | 528934 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa05g00547 | 1179 | CDD | STKc_MAST_like | 776 | 1061 | - | - | |
Csa05g00547 | 1179 | MobiDBLite | consensus disorder prediction | 930 | 956 | - | - | |
Csa05g00547 | 1179 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 1057 | 1159 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
Csa05g00547 | 1179 | Gene3D | Transferase(Phosphotransferase) domain 1 | 854 | 1074 | - | - | |
Csa05g00547 | 1179 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 889 | 901 | IPR008271 | GO:0004672|GO:0006468 | |
Csa05g00547 | 1179 | ProSiteProfiles | Protein kinase domain profile. | 770 | 1056 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa05g00547 | 1179 | PANTHER | SERINE/THREONINE PROTEIN KINASE IRE-RELATED | 15 | 1179 | - | - | |
Csa05g00547 | 1179 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 15 | 1179 | - | - | |
Csa05g00547 | 1179 | MobiDBLite | consensus disorder prediction | 404 | 428 | - | - | |
Csa05g00547 | 1179 | SUPERFAMILY | Protein kinase-like (PK-like) | 769 | 1087 | IPR011009 | - | |
Csa05g00547 | 1179 | Gene3D | Phosphorylase Kinase; domain 1 | 769 | 1083 | - | - | |
Csa05g00547 | 1179 | MobiDBLite | consensus disorder prediction | 1 | 51 | - | - | |
Csa05g00547 | 1179 | MobiDBLite | consensus disorder prediction | 22 | 38 | - | - | |
Csa05g00547 | 1179 | Pfam | Protein kinase domain | 770 | 1056 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa05g00547 | 1179 | SMART | serkin_6 | 770 | 1056 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa05g00547 | 1179 | MobiDBLite | consensus disorder prediction | 409 | 428 | - | - | |
Csa05g00547 | 1179 | MobiDBLite | consensus disorder prediction | 85 | 120 | - | - | |
Csa05g00547 | 1179 | MobiDBLite | consensus disorder prediction | 86 | 120 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00192 | Csa-Chr1:1256453 | Csa05g00547 | Csa-Chr5:3529216 | 1.65E-71 | dispersed | |
Csa01g00494 | Csa-Chr1:3256458 | Csa05g00547 | Csa-Chr5:3529216 | 0 | dispersed | |
Csa05g00547 | Csa-Chr5:3529216 | Csa06g03876 | Csa-Chr6:30657025 | 2.78E-79 | dispersed | |
Csa05g00547 | Csa-Chr5:3529216 | Csa04g02559 | Csa-Chr4:25208589 | 5.97E-77 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78223 | PF00069 | Pkinase | 4.00E-64 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa05g00547 | - | - | csv:101210442 | 2328.13 |