Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00547 ATGTCCGAATCATTTCCCTCCGATCATGATCCCTCTCCCTCCGCCGGAAAGCTCCGCAAGATCCCTCCCATCCCTGTTCGCCGCGATTCCAAATCCAACGCTGGAGACTCCGATTCCGATTCCGATGCCGATTCCGATTCCGATCTTGAACATGACCTTACCGAGGAATTTCCTCTTCAACCTGACGATTCCTGCATCATTATGGCATCATCTCTTGGATTGAATCACATTCGGACGAGGTCTGCTCCTTTGCCGCTACGGACCTCTGCTGTTGGCACGCCTTCCAATTTGGGAGATAATTCCAGAAATAATGTCACCGAGGGGACCAATTCTGAGCCAAAAGTTTCCTCCACTGAACTAGGGAAAAGAGTTCTGTGGAGTCAATCGAAATCGTTCAGACATCCGCCATCTGTGAATCATGATTTTGAGGGTAATCATGTAGCCTTTGGAAAGGAAATTCAGTCTCCACGGTTTCGTGCCATATTGCGTGTTACTAGTGGAAGAAGGAAGAGAACCCCGGATATCAAAAGCTTCTCTCACGAGCTCAATTCCAAGGGAGTTCGCCCTTTTCCACTTTGGAAACCTCGAGCACTTGGACATTTGGAAGAAATCATGGTGGCTATCAGAGAAAAATTTGACAGATTGAAGGATGATGTTAATAACGAACTGGGCATTTTTGCTGGAGATCTCGTAGATTTACTTGACAAGACAGACCACTCTCAGCCTGAACTAAGAAAGGGTTTAGAGGACTTACTGGTGATGTCCCGGAAATGTGCAACAATATCACCTGCAGATTTCTGGGCGGAAGGAGAAGGGATTGTCCAAAGTCTAGATGACCGGCGGCAGGAGCTGTCATTAGGGGTTCTTAAGCAAGCCCACACCCGTATACTCTTCATCCTGACACGATGTACTCGGCTGATTCAGTTCCGAAAGGAGAGTGGTTATGAAGATGACCACATTCTGGGTTTTCATCAACTCAGTGATCTAGGAATTTATCCAGAGAAAATTAGGCAGCTCGAACAACTTAACTTTGGTGATCCATTGATTGTGAAAGAAGAAATTCGGCAGCAGCTAAATTTGGTTGCTAAGGATCAAGCCAGTCACATTGTGAAGCAAGATTTAGGTCAAAATTTTATCAATAGTGCTGGAAATGTTGAGCTGGGCTCTGCTTTAAGTGTTGATTCATCTACAAGTATGAGGATGGCATCCTGGAAAAAGCTACCGTCAGCTGCTGAGAAGAACCGGAAAGACGCTGACTCTACTGGAACACCTTCCAGGGATAAACTTGAACTGTTGCATGAAAATGAAGCTAAAACTGGGAGCAACAACCAATTAGATACCCCATCTAATCATGTTGCGCATTTGGAAGCACCTCCTAAAGAACAAAAACTATCTTGGGGAATATGGGGTTATCATCAAAATGCCACTTTTGAAAATTTAATGATTTGTCGGATTTGTGAGGTTGAGATTCCGACCATTCATGTTGAGGAACATTCTCGAATATGTACAATTGCTGATAGGTGTGATTTGAAAGGTTTAACAGTGAATGAGCGCCTCGACCGGGTTGCTACAGCTCTTGAAAAGATACTAGAGTCTTGGACGCCTAAAAGTACACCAAGAAGTAGTGATACTTCCTGCGGAAATTTTGATACCATTAAGGTTTCTACATCAAGTATGCAAGAAGAGGTTTTTGTTGAGCTGTCATCCAGAGGAGTAAATTCGTCATGTCGAAACTCTGAAGATCTGCTTGATTCCCTTCCTGTTACTGGCAGCAACTCCTTTATAGAAAGTCAGGATATTTTTCCTGATTCATCATTCAATCGGCAATTTATTTTCACACCAGATTACAGTACGAAATCAACTTCAGCTGGAACTCTTACACCAAGATCACCTCTTTTAACCCCCAGATCCAGCCAGATTGAATTGTTGTTGCATGGGCGAAAAGCAATATCTGAACTTGAAAATTATCAGCAGATTTTCAAATTATTGGATATTGTTCGTTCCATTGCAAATGTTAACGACTCTGGTTATGGTGCATTGGAGTCTATGCTTGATCGATTAGAGGACCTTAAATATGCAATCCAGGATAGGAAGGTGGATGCCCTTGTTGTGGAGACTTTTGGAAGGCGCATAGAGAAGCTATTGCAGGAAAAATATGTACATCTTTGTGGGCAAATTGAAGATGATAAATTAGAATCTTCACATGGCATGGTTGATGAAGAGAGTCCAGTGGAAGATGATACTGTCCGTAGTTTGCGTGCAAGTCCTGTCAACAAATGCTCAAAAGATCGTACATCTATTGCAGATTTTGAAATAATTAAGCCAATTAGTAGAGGGGCATATGGCCGAGTTTTTCTTGCCAGAAAAAGAGCAACTGGAGACTTGTTTGCAATAAAGGTTTTAAAGAAGGCTGATATGATTCGCAAGAATGCAGTTGAAAGTATTTTGGCTGAACGCAACATTCTTATCTCAGTTCGCAACCCTTTTGTGGTCCGCTTTTTCTACTCTTTCACATGTAGGGAAAATCTGTATCTGGTCATGGAGTACTTAAATGGTGGTGATATTTATTCCTTACTGAGAAACCTAGGGTGCTTAGACGAAGATATGGCTCGTATTTATATCGCTGAAATTGTTCTAGCTTTGGAGTATTTGCACTCCTTAAATGTGATTCACAGAGACTTAAAGCCAGATAACTTATTGATCGGTCAAGATGGTCACATTAAGTTGACAGACTTTGGGCTCTCCAAGATTGGTCTTATCAATAGTACAGATGATTTCTCAGGTCCATCAATCAGTGGACCTGACTCACTTGGAGACAATGGACCAGCATCTTTGCCAAAAAGAGAACACAGACAAAAGCAGTCAGTAGTCGGTACTCCAGATTATTTGGCTCCTGAGATACTTCTGGGCATGGGACATGGTGTAACTGCGGATTGGTGGTCTGTTGGAGTAATTCTTTTTGAGATGCTTGTAGGAATACCGCCGTTCAATGAAGAGAATCCACAGCAAATTTTTGATAATATCATTAACAGAGACATACCATGGCCCAGGGTGCCTGACGAGATGAGTTATGAAGCCCACGATTTGATTGACAAATTGCTGACTGACAATGCAGTTCAAAGACTGGGAGCTACTGGAGCCAGGGAGGTGAAAGAGCATCCTTTCTTCAAAGATGTTAACTGGGAAACCCTTGAAAGGCAGAAGGCCATGTTTATACCATCAGCAGAGCCACAGGATACAAGTTATTTCATGAGCCGTTATATATGGAATCCAGAAGATGAGGATTTTAATGGTGGAAGTGATTTTGATGATCATGATTTGACTGATACTTGCAGCAGTAGTTCATTTAGTAACCTACAAGATGAAGACGGAGACGAGTGTGGTAGTTTGACTGACTTCTGTACATCAGCCCTTTCTGTGAAGTACTCGTTCAGCAATTTCTCTTTCAAGAATTTATCACAACTGGCTTCCATCAATTACGATTTGGTTGTGAAGAGCAGTCAAAATTCGCCAGATGTATCAAAACCATCCGTTCCTTGA 3540 42.4 MSESFPSDHDPSPSAGKLRKIPPIPVRRDSKSNAGDSDSDSDADSDSDLEHDLTEEFPLQPDDSCIIMASSLGLNHIRTRSAPLPLRTSAVGTPSNLGDNSRNNVTEGTNSEPKVSSTELGKRVLWSQSKSFRHPPSVNHDFEGNHVAFGKEIQSPRFRAILRVTSGRRKRTPDIKSFSHELNSKGVRPFPLWKPRALGHLEEIMVAIREKFDRLKDDVNNELGIFAGDLVDLLDKTDHSQPELRKGLEDLLVMSRKCATISPADFWAEGEGIVQSLDDRRQELSLGVLKQAHTRILFILTRCTRLIQFRKESGYEDDHILGFHQLSDLGIYPEKIRQLEQLNFGDPLIVKEEIRQQLNLVAKDQASHIVKQDLGQNFINSAGNVELGSALSVDSSTSMRMASWKKLPSAAEKNRKDADSTGTPSRDKLELLHENEAKTGSNNQLDTPSNHVAHLEAPPKEQKLSWGIWGYHQNATFENLMICRICEVEIPTIHVEEHSRICTIADRCDLKGLTVNERLDRVATALEKILESWTPKSTPRSSDTSCGNFDTIKVSTSSMQEEVFVELSSRGVNSSCRNSEDLLDSLPVTGSNSFIESQDIFPDSSFNRQFIFTPDYSTKSTSAGTLTPRSPLLTPRSSQIELLLHGRKAISELENYQQIFKLLDIVRSIANVNDSGYGALESMLDRLEDLKYAIQDRKVDALVVETFGRRIEKLLQEKYVHLCGQIEDDKLESSHGMVDEESPVEDDTVRSLRASPVNKCSKDRTSIADFEIIKPISRGAYGRVFLARKRATGDLFAIKVLKKADMIRKNAVESILAERNILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDIYSLLRNLGCLDEDMARIYIAEIVLALEYLHSLNVIHRDLKPDNLLIGQDGHIKLTDFGLSKIGLINSTDDFSGPSISGPDSLGDNGPASLPKREHRQKQSVVGTPDYLAPEILLGMGHGVTADWWSVGVILFEMLVGIPPFNEENPQQIFDNIINRDIPWPRVPDEMSYEAHDLIDKLLTDNAVQRLGATGAREVKEHPFFKDVNWETLERQKAMFIPSAEPQDTSYFMSRYIWNPEDEDFNGGSDFDDHDLTDTCSSSSFSNLQDEDGDECGSLTDFCTSALSVKYSFSNFSFKNLSQLASINYDLVVKSSQNSPDVSKPSVP* 1180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3529216 3541038 + CsaV3_5G005470.1 Csa05g00547 528934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00547 1179 CDD STKc_MAST_like 776 1061 - -
Csa05g00547 1179 MobiDBLite consensus disorder prediction 930 956 - -
Csa05g00547 1179 ProSiteProfiles AGC-kinase C-terminal domain profile. 1057 1159 IPR000961 GO:0004674|GO:0005524|GO:0006468
Csa05g00547 1179 Gene3D Transferase(Phosphotransferase) domain 1 854 1074 - -
Csa05g00547 1179 ProSitePatterns Serine/Threonine protein kinases active-site signature. 889 901 IPR008271 GO:0004672|GO:0006468
Csa05g00547 1179 ProSiteProfiles Protein kinase domain profile. 770 1056 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g00547 1179 PANTHER SERINE/THREONINE PROTEIN KINASE IRE-RELATED 15 1179 - -
Csa05g00547 1179 PANTHER SERINE/THREONINE-PROTEIN KINASE 15 1179 - -
Csa05g00547 1179 MobiDBLite consensus disorder prediction 404 428 - -
Csa05g00547 1179 SUPERFAMILY Protein kinase-like (PK-like) 769 1087 IPR011009 -
Csa05g00547 1179 Gene3D Phosphorylase Kinase; domain 1 769 1083 - -
Csa05g00547 1179 MobiDBLite consensus disorder prediction 1 51 - -
Csa05g00547 1179 MobiDBLite consensus disorder prediction 22 38 - -
Csa05g00547 1179 Pfam Protein kinase domain 770 1056 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g00547 1179 SMART serkin_6 770 1056 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g00547 1179 MobiDBLite consensus disorder prediction 409 428 - -
Csa05g00547 1179 MobiDBLite consensus disorder prediction 85 120 - -
Csa05g00547 1179 MobiDBLite consensus disorder prediction 86 120 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00192 Csa-Chr1:1256453 Csa05g00547 Csa-Chr5:3529216 1.65E-71 dispersed
Csa01g00494 Csa-Chr1:3256458 Csa05g00547 Csa-Chr5:3529216 0 dispersed
Csa05g00547 Csa-Chr5:3529216 Csa06g03876 Csa-Chr6:30657025 2.78E-79 dispersed
Csa05g00547 Csa-Chr5:3529216 Csa04g02559 Csa-Chr4:25208589 5.97E-77 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78223 PF00069 Pkinase 4.00E-64 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00547 - - csv:101210442 2328.13