Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00560 ATGCTTTTATTGGTTTTGAGGGTGAGATTGAGAAATGGGGATAGATTCCCATTCCTTCCTCTTTTAGGGTTTCTTCTTTCTTCCAGCCATTTTCACACTATAATTTTCTCATTCTTCTTCTTCTTCTTCTTCACTCTCCACTCTTCTATGATTCTCTATAAAACCCCTTGGGATAAATTTGGAAAGAACGACATGGTTCGTGGGAAAGTAGAAATGAAACGAATTGAAAATTCGACGAGTCGTCAAGTGACATTCTCAAAGAGAAGAAATGGACTTTTGAAGAAAGCTTATGAATTATCCGTTCTTTGTGATGCTGAAGTTTCTGTCATCATTTTCTCCCAGAAAGGAAGACTCTATGAATTCTCAAGCTCCGACATGCAAAAGACAATCGAACGCTATCGAAAGCATGGGAAAGACGGACAAAGCAACCCTTTTCGATCAGAAGGATATATGCAGCAACTGAAGCAAGAAGCTGAGATGACTGCAAAGAAAATCGAACAACTTGAGAAATCCCAACAGAAGCTTTTAGGACGTGGGTTGGATTCTTGTTCTTTTGAGGAAATTCGAGAGATTGAAAGACAATTGGTACTTAGCTTAACTCGTATCAGAGAAACTAAGGCTCAGCTATTCAAGGAGCAAAAAGAGAAGCTGATTGAAAAGGGAAAGCTTCTTTTAGAAGAAAATCTGAAGTTATCTGCAAAGTGTGGTACTAAGCCATGGCAAGAAGAAGGTGTTGAAGGAGATGGAGGCATAAATATGATGAGTAATTTATGCAGCCAAAGTACTAATAGCCAAGCTTCTGATCATCACATGCAGACTGATTTGTTCATTGGATTGTCTTGCTCATAA 849 38.63 MLLLVLRVRLRNGDRFPFLPLLGFLLSSSHFHTIIFSFFFFFFFTLHSSMILYKTPWDKFGKNDMVRGKVEMKRIENSTSRQVTFSKRRNGLLKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSDMQKTIERYRKHGKDGQSNPFRSEGYMQQLKQEAEMTAKKIEQLEKSQQKLLGRGLDSCSFEEIREIERQLVLSLTRIRETKAQLFKEQKEKLIEKGKLLLEENLKLSAKCGTKPWQEEGVEGDGGINMMSNLCSQSTNSQASDHHMQTDLFIGLSCS* 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3656105 3669120 - CsaV3_5G005600.1 Csa05g00560 528947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00560 282 Gene3D - 77 169 IPR036879 GO:0003677|GO:0046983
Csa05g00560 282 PRINTS MADS domain signature 87 102 IPR002100 GO:0003677|GO:0046983
Csa05g00560 282 PRINTS MADS domain signature 67 87 IPR002100 GO:0003677|GO:0046983
Csa05g00560 282 PRINTS MADS domain signature 102 123 IPR002100 GO:0003677|GO:0046983
Csa05g00560 282 ProSiteProfiles MADS-box domain profile. 65 125 IPR002100 GO:0003677|GO:0046983
Csa05g00560 282 SUPERFAMILY SRF-like 67 139 IPR036879 GO:0003677|GO:0046983
Csa05g00560 282 ProSitePatterns MADS-box domain signature. 67 121 IPR002100 GO:0003677|GO:0046983
Csa05g00560 282 PANTHER MADS-BOX PROTEIN SOC1 65 279 - -
Csa05g00560 282 PANTHER MADS BOX PROTEIN 65 279 - -
Csa05g00560 282 Coils Coil 151 171 - -
Csa05g00560 282 CDD MADS_MEF2_like 67 142 IPR033896 GO:0000977|GO:0045944
Csa05g00560 282 SMART madsneu2 65 124 IPR002100 GO:0003677|GO:0046983
Csa05g00560 282 ProSiteProfiles K-box domain profile. 151 241 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa05g00560 282 Pfam K-box region 152 235 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa05g00560 282 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 74 121 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g01665 Csa05g00560 CCT
Csa03g01665 Csa05g00560 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00336 Csa-Chr5:2144062 Csa05g00560 Csa-Chr5:3656105 7.88E-51 dispersed
Csa05g00560 Csa-Chr5:3656105 Csa06g00602 Csa-Chr6:5105163 7.05E-58 dispersed
Csa03g01665 Csa-Chr3:12467314 Csa05g00560 Csa-Chr5:3656105 1.39E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31694 PF01486 K-box 6.30E-19 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00560 - - csv:101212323 435.261