Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00560 ATGCTTTTATTGGTTTTGAGGGTGAGATTGAGAAATGGGGATAGATTCCCATTCCTTCCTCTTTTAGGGTTTCTTCTTTCTTCCAGCCATTTTCACACTATAATTTTCTCATTCTTCTTCTTCTTCTTCTTCACTCTCCACTCTTCTATGATTCTCTATAAAACCCCTTGGGATAAATTTGGAAAGAACGACATGGTTCGTGGGAAAGTAGAAATGAAACGAATTGAAAATTCGACGAGTCGTCAAGTGACATTCTCAAAGAGAAGAAATGGACTTTTGAAGAAAGCTTATGAATTATCCGTTCTTTGTGATGCTGAAGTTTCTGTCATCATTTTCTCCCAGAAAGGAAGACTCTATGAATTCTCAAGCTCCGACATGCAAAAGACAATCGAACGCTATCGAAAGCATGGGAAAGACGGACAAAGCAACCCTTTTCGATCAGAAGGATATATGCAGCAACTGAAGCAAGAAGCTGAGATGACTGCAAAGAAAATCGAACAACTTGAGAAATCCCAACAGAAGCTTTTAGGACGTGGGTTGGATTCTTGTTCTTTTGAGGAAATTCGAGAGATTGAAAGACAATTGGTACTTAGCTTAACTCGTATCAGAGAAACTAAGGCTCAGCTATTCAAGGAGCAAAAAGAGAAGCTGATTGAAAAGGGAAAGCTTCTTTTAGAAGAAAATCTGAAGTTATCTGCAAAGTGTGGTACTAAGCCATGGCAAGAAGAAGGTGTTGAAGGAGATGGAGGCATAAATATGATGAGTAATTTATGCAGCCAAAGTACTAATAGCCAAGCTTCTGATCATCACATGCAGACTGATTTGTTCATTGGATTGTCTTGCTCATAA 849 38.63 MLLLVLRVRLRNGDRFPFLPLLGFLLSSSHFHTIIFSFFFFFFFTLHSSMILYKTPWDKFGKNDMVRGKVEMKRIENSTSRQVTFSKRRNGLLKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSDMQKTIERYRKHGKDGQSNPFRSEGYMQQLKQEAEMTAKKIEQLEKSQQKLLGRGLDSCSFEEIREIERQLVLSLTRIRETKAQLFKEQKEKLIEKGKLLLEENLKLSAKCGTKPWQEEGVEGDGGINMMSNLCSQSTNSQASDHHMQTDLFIGLSCS* 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3656105 3669120 - CsaV3_5G005600.1 Csa05g00560 528947

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00560 282 Gene3D - 77 169 IPR036879 GO:0003677|GO:0046983
Csa05g00560 282 PRINTS MADS domain signature 87 102 IPR002100 GO:0003677|GO:0046983
Csa05g00560 282 PRINTS MADS domain signature 67 87 IPR002100 GO:0003677|GO:0046983
Csa05g00560 282 PRINTS MADS domain signature 102 123 IPR002100 GO:0003677|GO:0046983
Csa05g00560 282 ProSiteProfiles MADS-box domain profile. 65 125 IPR002100 GO:0003677|GO:0046983
Csa05g00560 282 SUPERFAMILY SRF-like 67 139 IPR036879 GO:0003677|GO:0046983
Csa05g00560 282 ProSitePatterns MADS-box domain signature. 67 121 IPR002100 GO:0003677|GO:0046983
Csa05g00560 282 PANTHER MADS-BOX PROTEIN SOC1 65 279 - -
Csa05g00560 282 PANTHER MADS BOX PROTEIN 65 279 - -
Csa05g00560 282 Coils Coil 151 171 - -
Csa05g00560 282 CDD MADS_MEF2_like 67 142 IPR033896 GO:0000977|GO:0045944
Csa05g00560 282 SMART madsneu2 65 124 IPR002100 GO:0003677|GO:0046983
Csa05g00560 282 ProSiteProfiles K-box domain profile. 151 241 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa05g00560 282 Pfam K-box region 152 235 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa05g00560 282 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 74 121 IPR002100 GO:0003677|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00560 - - - csv:101212323 435.261
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa03g01665 Csa05g00560 CCT
Csa03g01665 Csa05g00560 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00336 Csa-Chr5:2144062 Csa05g00560 Csa-Chr5:3656105 7.88E-51 dispersed
Csa05g00560 Csa-Chr5:3656105 Csa06g00602 Csa-Chr6:5105163 7.05E-58 dispersed
Csa03g01665 Csa-Chr3:12467314 Csa05g00560 Csa-Chr5:3656105 1.39E-58 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g549 . Blo15g00152 Bda05g00042 . . . Bma10g01180 . . . Cma02g01025 Cma15g01396 . Car15g01258 . Cpe05g00693 . Bhi01g01386 . . Lac11g2156 . Mch10g0200 . Cla01g00524 Cam01g0544 Cec01g0537 Cco01g0562 Clacu01g0543 Cmu01g0516 Cre09g1993 . . Cone14ag0123 Cone15ag0131 Lsi05g01277 Csa05g00560 Chy09g00944 Cme06g00949 Blo07g00444 . Bda06g00660 Bda15g00745 . . Bma08g00348 . . Cmo02g01041 Cmo15g01463 . . . . . Cpe13g00187 Bhi12g00330 . . . . . . Cla05g00836 Cam05g0921 Cec05g0925 Cco05g0928 Clacu05g0909 Cmu05g0867 Cre05g0953 . Csa03g01665 Chy06g00898 Cme09g01472
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa06g03736 CCT 15 238 MADS-box Gene Family AT3G58780 65.0 2.9e-74 275.4
Csa06g01379 . 1 237 MADS-box Gene Family AT3G58780 64.9 1.1e-73 273.5
Csa05g03218 . 1 224 MADS-box Gene Family AT3G58780 61.1 1.2e-72 270.0
Csa01g02284 CCT 19 244 MADS-box Gene Family AT3G58780 62.6 3.3e-70 261.9
Csa01g00622 . 1 260 MADS-box Gene Family AT1G26310 53.4 1.6e-64 243.0
Csa06g02093 . 1 178 MADS-box Gene Family AT1G26310 69.1 2.5e-62 235.7
Csa04g01008 . 1 187 MADS-box Gene Family AT1G26310 65.1 3.6e-61 231.9
Csa06g00820 . 1 208 MADS-box Gene Family AT1G26310 50.2 5.3e-44 174.9
Csa01g00621 . 1 174 MADS-box Gene Family AT1G26310 55.3 8.4e-42 167.5
Csa06g00601 . 1 158 MADS-box Gene Family AT1G26310 58.3 1.1e-41 167.2
Csa04g01009 . 1 173 MADS-box Gene Family AT1G26310 53.4 5.4e-41 164.9
Csa06g02092 . 1 132 MADS-box Gene Family AT1G26310 58.5 1.4e-36 150.2
Csa05g03218 . 1 226 MADS-box Gene Family AT4G09960 75.4 2.7e-87 318.5
Csa06g03736 CCT 17 192 MADS-box Gene Family AT4G09960 73.3 1.7e-65 246.1
Csa01g02284 CCT 26 203 MADS-box Gene Family AT4G09960 73.0 3.2e-64 241.9
Csa06g01379 . 1 180 MADS-box Gene Family AT4G09960 70.6 3.2e-64 241.9
Csa05g03212 . 1 204 MADS-box Gene Family AT1G71692 56.6 1.9e-55 212.6
Csa06g00601 . 1 243 MADS-box Gene Family AT3G61120 54.5 5.4e-62 234.6
Csa06g00820 . 1 170 MADS-box Gene Family AT3G61120 55.8 1.8e-41 166.4
Csa04g01009 . 1 173 MADS-box Gene Family AT3G61120 53.2 8.9e-41 164.1
Csa05g00336 . 1 207 MADS-box Gene Family AT4G11880 58.1 4.9e-54 208.0
Csa03g00940 CCT,ECH 1 218 MADS-box Gene Family AT4G11880 54.3 6.2e-49 191.0
Csa06g00602 CCT,ECH 1 214 MADS-box Gene Family AT4G11880 50.7 2.2e-46 182.6
Csa05g00560 CCT,ECH 65 278 MADS-box Gene Family AT4G11880 53.5 1.2e-44 176.8
Csa03g01665 CCT,ECH 1 168 MADS-box Gene Family AT4G11880 55.6 1.1e-40 163.7
Csa03g02884 . 1 243 MADS-box Gene Family AT5G13790 52.9 5.4e-55 211.5
Csa03g04509 . 1 207 MADS-box Gene Family AT2G22630 56.1 1.8e-59 226.1
Csa04g01173 . 1 225 MADS-box Gene Family AT2G22630 51.1 1.9e-53 206.1
Csa06g03095 . 1 156 MADS-box Gene Family AT2G22630 65.0 1.1e-48 190.3
Csa04g01862 . 18 191 MADS-box Gene Family AT3G57390 52.8 3.4e-42 168.7
Csa05g00336 . 1 207 MADS-box Gene Family AT4G22950 59.5 1.0e-56 216.9
Csa03g00940 CCT,ECH 1 218 MADS-box Gene Family AT4G22950 54.6 7.7e-52 200.7
Csa06g00602 CCT,ECH 1 214 MADS-box Gene Family AT4G22950 54.4 1.5e-50 196.4
Csa05g00560 CCT,ECH 65 278 MADS-box Gene Family AT4G22950 51.4 1.7e-43 172.9
Csa03g01665 CCT,ECH 1 168 MADS-box Gene Family AT4G22950 55.4 7.2e-42 167.5
Csa05g03218 . 1 164 MADS-box Gene Family AT4G22950 51.8 2.4e-37 152.5
Csa04g01009 . 1 247 MADS-box Gene Family AT5G15800 72.2 1.7e-98 355.9
Csa06g00820 . 1 241 MADS-box Gene Family AT5G15800 59.8 1.5e-73 273.1
Csa01g00621 . 1 257 MADS-box Gene Family AT5G15800 52.6 8.0e-64 240.7
Csa06g02092 . 1 189 MADS-box Gene Family AT5G15800 53.8 9.2e-44 174.1
Csa04g01008 . 1 175 MADS-box Gene Family AT5G15800 55.4 7.8e-43 171.0
Csa06g02093 . 1 176 MADS-box Gene Family AT5G15800 53.4 4.3e-41 165.2
Csa03g01662 . 1 170 MADS-box Gene Family AT5G15800 55.5 4.7e-40 161.8
Csa06g00602 CCT,ECH 1 162 MADS-box Gene Family AT2G45660 69.1 4.3e-52 201.1
Csa03g00940 CCT,ECH 1 162 MADS-box Gene Family AT2G45660 67.9 3.6e-51 198.0
Csa05g00336 . 1 159 MADS-box Gene Family AT2G45660 64.8 7.5e-49 190.3
Csa05g00560 CCT,ECH 65 222 MADS-box Gene Family AT2G45660 65.8 1.6e-46 182.6
Csa03g01665 CCT,ECH 1 159 MADS-box Gene Family AT2G45660 56.6 3.4e-41 164.9
Csa03g04509 . 1 218 MADS-box Gene Family AT4G37940 56.3 3.7e-59 224.9
Csa04g01173 . 1 226 MADS-box Gene Family AT4G37940 51.3 8.0e-54 207.2
Csa06g03095 . 1 151 MADS-box Gene Family AT4G37940 67.1 1.6e-49 193.0
Csa06g03115 . 1 229 MADS-box Gene Family AT2G22540 64.2 2.8e-71 265.4
Csa02g02211 . 1 227 MADS-box Gene Family AT2G22540 52.5 1.4e-54 209.9
Csa04g01180 . 1 152 MADS-box Gene Family AT2G22540 53.8 1.3e-36 150.2
Csa06g03115 . 1 225 MADS-box Gene Family AT4G24540 58.0 1.0e-59 226.9
Csa02g02211 . 1 227 MADS-box Gene Family AT4G24540 54.6 2.3e-56 215.7
Csa04g01180 . 1 167 MADS-box Gene Family AT4G24540 52.0 1.3e-38 156.8
Csa04g01009 . 1 171 MADS-box Gene Family AT2G03710 67.4 1.8e-57 219.2
Csa06g00820 . 1 176 MADS-box Gene Family AT2G03710 63.8 2.4e-54 208.8
Csa01g00621 . 1 172 MADS-box Gene Family AT2G03710 61.8 2.5e-51 198.7
Csa06g02092 . 1 171 MADS-box Gene Family AT2G03710 54.7 4.3e-43 171.4
Csa06g00601 . 1 169 MADS-box Gene Family AT2G03710 53.5 6.2e-42 167.5
Csa04g01008 . 1 173 MADS-box Gene Family AT2G03710 51.7 2.2e-39 159.1
Csa04g01009 . 1 170 MADS-box Gene Family AT3G02310 86.5 2.4e-76 282.0
Csa06g00820 . 1 172 MADS-box Gene Family AT3G02310 77.9 1.2e-67 253.1
Csa01g00621 . 1 185 MADS-box Gene Family AT3G02310 63.2 1.5e-57 219.5
Csa06g00601 . 1 168 MADS-box Gene Family AT3G02310 62.0 3.6e-48 188.3
Csa06g02092 . 1 132 MADS-box Gene Family AT3G02310 67.7 5.1e-42 167.9
Csa04g01008 . 1 181 MADS-box Gene Family AT3G02310 54.1 8.6e-42 167.2
Csa06g02093 . 1 181 MADS-box Gene Family AT3G02310 53.0 2.8e-40 162.2
Csa03g01662 . 1 168 MADS-box Gene Family AT3G02310 55.6 1.8e-39 159.5
Csa05g00560 CCT,ECH 65 209 MADS-box Gene Family AT5G62165 67.6 3.6e-48 188.0
Csa03g01665 CCT,ECH 1 151 MADS-box Gene Family AT5G62165 58.8 2.1e-43 172.2
Csa05g00336 . 1 147 MADS-box Gene Family AT5G62165 61.2 1.9e-41 165.6
Csa06g00602 CCT,ECH 1 154 MADS-box Gene Family AT5G62165 56.5 2.5e-41 165.2
Csa03g00940 CCT,ECH 1 146 MADS-box Gene Family AT5G62165 58.2 2.1e-40 162.2
Csa04g01173 . 1 142 MADS-box Gene Family AT2G14210 76.9 2.5e-56 215.7
Csa03g04509 . 1 142 MADS-box Gene Family AT2G14210 74.1 1.7e-52 203.0
Csa06g03095 . 1 138 MADS-box Gene Family AT2G14210 67.1 5.4e-43 171.4
Csa05g03218 . 1 208 MADS-box Gene Family AT2G42830 62.4 4.2e-70 261.5
Csa01g02284 CCT 21 246 MADS-box Gene Family AT2G42830 61.4 1.3e-68 256.5
Csa06g03736 CCT 15 238 MADS-box Gene Family AT2G42830 63.3 1.3e-68 256.5
Csa06g01379 . 1 180 MADS-box Gene Family AT2G42830 74.7 3.0e-68 255.4
Csa06g00601 . 1 248 MADS-box Gene Family AT2G45650 63.4 4.1e-81 298.1
Csa04g01009 . 1 247 MADS-box Gene Family AT2G45650 50.2 1.6e-53 206.5
Csa05g03218 . 1 164 MADS-box Gene Family AT2G45650 53.0 4.6e-40 161.8
Csa06g02093 . 1 170 MADS-box Gene Family AT2G45650 54.1 1.0e-39 160.6
Csa04g01008 . 1 169 MADS-box Gene Family AT2G45650 52.1 5.0e-39 158.3
Csa06g02092 . 1 132 MADS-box Gene Family AT2G45650 62.9 1.6e-37 153.3
Csa06g03772 . 49 165 MADS-box Gene Family AT1G29960 55.6 7.9e-38 153.3
Csa01g00622 . 76 208 MADS-box Gene Family AT1G69120 60.9 9.6e-38 153.7
Csa03g01665 CCT,ECH 1 145 MADS-box Gene Family AT5G51870 53.8 1.2e-40 163.3
Csa05g00560 CCT,ECH 62 208 MADS-box Gene Family AT5G51870 56.2 3.0e-39 158.7
Csa05g00336 . 1 147 MADS-box Gene Family AT5G51870 53.7 8.1e-37 150.6
Csa04g01008 . 1 241 MADS-box Gene Family AT3G30260 50.2 1.6e-50 196.4
Csa06g02093 . 1 178 MADS-box Gene Family AT3G30260 58.4 1.1e-46 183.7
Csa01g00622 . 76 256 MADS-box Gene Family AT5G60910 56.4 2.7e-42 168.7
Csa06g00820 . 1 242 MADS-box Gene Family AT1G24260 72.9 7.2e-88 320.5
Csa04g01009 . 1 245 MADS-box Gene Family AT1G24260 60.2 1.2e-69 260.0
Csa06g02092 . 1 132 MADS-box Gene Family AT1G24260 66.9 1.7e-41 166.4
Csa06g02093 . 1 162 MADS-box Gene Family AT1G24260 52.8 2.3e-41 166.0
Csa04g01008 . 1 161 MADS-box Gene Family AT1G24260 54.6 3.3e-40 162.2
Csa03g01662 . 1 175 MADS-box Gene Family AT1G24260 50.5 8.9e-38 154.1
Csa03g04253 . 33 277 MADS-box Gene Family AT3G54340 59.2 1.0e-70 263.5
Csa04g01775 . 1 139 MADS-box Gene Family AT5G20240 71.9 1.6e-53 205.7
Csa04g01775 . 1 139 MADS-box Gene Family AT5G20240 71.9 1.6e-53 205.7
Csa03g04253 . 33 277 MADS-box Gene Family AT3G54340 59.2 1.0e-70 263.5
Csa06g03736 CCT 15 238 MADS-box Gene Family AT3G58780 65.0 2.9e-74 275.4
Csa06g01379 . 1 237 MADS-box Gene Family AT3G58780 64.9 1.1e-73 273.5
Csa05g03218 . 1 224 MADS-box Gene Family AT3G58780 61.1 1.2e-72 270.0
Csa01g02284 CCT 19 244 MADS-box Gene Family AT3G58780 62.6 3.3e-70 261.9
Csa04g01009 . 1 247 MADS-box Gene Family AT5G15800 72.2 1.7e-98 355.9
Csa06g00820 . 1 241 MADS-box Gene Family AT5G15800 59.8 1.5e-73 273.1
Csa01g00621 . 1 257 MADS-box Gene Family AT5G15800 52.6 8.0e-64 240.7
Csa06g02092 . 1 189 MADS-box Gene Family AT5G15800 53.8 9.2e-44 174.1
Csa04g01008 . 1 175 MADS-box Gene Family AT5G15800 55.4 7.8e-43 171.0
Csa06g02093 . 1 176 MADS-box Gene Family AT5G15800 53.4 4.3e-41 165.2
Csa03g01662 . 1 170 MADS-box Gene Family AT5G15800 55.5 4.7e-40 161.8
Csa04g01009 . 1 171 MADS-box Gene Family AT2G03710 67.4 1.8e-57 219.2
Csa06g00820 . 1 176 MADS-box Gene Family AT2G03710 63.8 2.4e-54 208.8
Csa01g00621 . 1 172 MADS-box Gene Family AT2G03710 61.8 2.5e-51 198.7
Csa06g02092 . 1 171 MADS-box Gene Family AT2G03710 54.7 4.3e-43 171.4
Csa06g00601 . 1 169 MADS-box Gene Family AT2G03710 53.5 6.2e-42 167.5
Csa04g01008 . 1 173 MADS-box Gene Family AT2G03710 51.7 2.2e-39 159.1
Csa04g01009 . 1 170 MADS-box Gene Family AT3G02310 86.5 2.4e-76 282.0
Csa06g00820 . 1 172 MADS-box Gene Family AT3G02310 77.9 1.2e-67 253.1
Csa01g00621 . 1 185 MADS-box Gene Family AT3G02310 63.2 1.5e-57 219.5
Csa06g00601 . 1 168 MADS-box Gene Family AT3G02310 62.0 3.6e-48 188.3
Csa06g02092 . 1 132 MADS-box Gene Family AT3G02310 67.7 5.1e-42 167.9
Csa04g01008 . 1 181 MADS-box Gene Family AT3G02310 54.1 8.6e-42 167.2
Csa06g02093 . 1 181 MADS-box Gene Family AT3G02310 53.0 2.8e-40 162.2
Csa03g01662 . 1 168 MADS-box Gene Family AT3G02310 55.6 1.8e-39 159.5
Csa05g03218 . 1 208 MADS-box Gene Family AT2G42830 62.4 4.2e-70 261.5
Csa01g02284 CCT 21 246 MADS-box Gene Family AT2G42830 61.4 1.3e-68 256.5
Csa06g03736 CCT 15 238 MADS-box Gene Family AT2G42830 63.3 1.3e-68 256.5
Csa06g01379 . 1 180 MADS-box Gene Family AT2G42830 74.7 3.0e-68 255.4
Csa06g00601 . 1 248 MADS-box Gene Family AT2G45650 63.4 4.1e-81 298.1
Csa04g01009 . 1 247 MADS-box Gene Family AT2G45650 50.2 1.6e-53 206.5
Csa05g03218 . 1 164 MADS-box Gene Family AT2G45650 53.0 4.6e-40 161.8
Csa06g02093 . 1 170 MADS-box Gene Family AT2G45650 54.1 1.0e-39 160.6
Csa04g01008 . 1 169 MADS-box Gene Family AT2G45650 52.1 5.0e-39 158.3
Csa06g02092 . 1 132 MADS-box Gene Family AT2G45650 62.9 1.6e-37 153.3
Csa01g00622 . 76 208 MADS-box Gene Family AT1G69120 60.9 9.6e-38 153.7
Csa01g00622 . 76 256 MADS-box Gene Family AT5G60910 56.4 2.7e-42 168.7
Csa06g00820 . 1 242 MADS-box Gene Family AT1G24260 72.9 7.2e-88 320.5
Csa04g01009 . 1 245 MADS-box Gene Family AT1G24260 60.2 1.2e-69 260.0
Csa06g02092 . 1 132 MADS-box Gene Family AT1G24260 66.9 1.7e-41 166.4
Csa06g02093 . 1 162 MADS-box Gene Family AT1G24260 52.8 2.3e-41 166.0
Csa04g01008 . 1 161 MADS-box Gene Family AT1G24260 54.6 3.3e-40 162.2
Csa03g01662 . 1 175 MADS-box Gene Family AT1G24260 50.5 8.9e-38 154.1
Csa01g00622 . 1 260 MADS-box Gene Family AT1G26310 53.4 1.6e-64 243.0
Csa06g02093 . 1 178 MADS-box Gene Family AT1G26310 69.1 2.5e-62 235.7
Csa04g01008 . 1 187 MADS-box Gene Family AT1G26310 65.1 3.6e-61 231.9
Csa06g00820 . 1 208 MADS-box Gene Family AT1G26310 50.2 5.3e-44 174.9
Csa01g00621 . 1 174 MADS-box Gene Family AT1G26310 55.3 8.4e-42 167.5
Csa06g00601 . 1 158 MADS-box Gene Family AT1G26310 58.3 1.1e-41 167.2
Csa04g01009 . 1 173 MADS-box Gene Family AT1G26310 53.4 5.4e-41 164.9
Csa06g02092 . 1 132 MADS-box Gene Family AT1G26310 58.5 1.4e-36 150.2
Csa05g03218 . 1 226 MADS-box Gene Family AT4G09960 75.4 2.7e-87 318.5
Csa06g03736 CCT 17 192 MADS-box Gene Family AT4G09960 73.3 1.7e-65 246.1
Csa01g02284 CCT 26 203 MADS-box Gene Family AT4G09960 73.0 3.2e-64 241.9
Csa06g01379 . 1 180 MADS-box Gene Family AT4G09960 70.6 3.2e-64 241.9
Csa05g03212 . 1 204 MADS-box Gene Family AT1G71692 56.6 1.9e-55 212.6
Csa06g00601 . 1 243 MADS-box Gene Family AT3G61120 54.5 5.4e-62 234.6
Csa06g00820 . 1 170 MADS-box Gene Family AT3G61120 55.8 1.8e-41 166.4
Csa04g01009 . 1 173 MADS-box Gene Family AT3G61120 53.2 8.9e-41 164.1
Csa05g00336 . 1 207 MADS-box Gene Family AT4G11880 58.1 4.9e-54 208.0
Csa03g00940 CCT,ECH 1 218 MADS-box Gene Family AT4G11880 54.3 6.2e-49 191.0
Csa06g00602 CCT,ECH 1 214 MADS-box Gene Family AT4G11880 50.7 2.2e-46 182.6
Csa05g00560 CCT,ECH 65 278 MADS-box Gene Family AT4G11880 53.5 1.2e-44 176.8
Csa03g01665 CCT,ECH 1 168 MADS-box Gene Family AT4G11880 55.6 1.1e-40 163.7
Csa03g02884 . 1 243 MADS-box Gene Family AT5G13790 52.9 5.4e-55 211.5
Csa03g04509 . 1 207 MADS-box Gene Family AT2G22630 56.1 1.8e-59 226.1
Csa04g01173 . 1 225 MADS-box Gene Family AT2G22630 51.1 1.9e-53 206.1
Csa06g03095 . 1 156 MADS-box Gene Family AT2G22630 65.0 1.1e-48 190.3
Csa04g01862 . 18 191 MADS-box Gene Family AT3G57390 52.8 3.4e-42 168.7
Csa05g00336 . 1 207 MADS-box Gene Family AT4G22950 59.5 1.0e-56 216.9
Csa03g00940 CCT,ECH 1 218 MADS-box Gene Family AT4G22950 54.6 7.7e-52 200.7
Csa06g00602 CCT,ECH 1 214 MADS-box Gene Family AT4G22950 54.4 1.5e-50 196.4
Csa05g00560 CCT,ECH 65 278 MADS-box Gene Family AT4G22950 51.4 1.7e-43 172.9
Csa03g01665 CCT,ECH 1 168 MADS-box Gene Family AT4G22950 55.4 7.2e-42 167.5
Csa05g03218 . 1 164 MADS-box Gene Family AT4G22950 51.8 2.4e-37 152.5
Csa06g00602 CCT,ECH 1 162 MADS-box Gene Family AT2G45660 69.1 4.3e-52 201.1
Csa03g00940 CCT,ECH 1 162 MADS-box Gene Family AT2G45660 67.9 3.6e-51 198.0
Csa05g00336 . 1 159 MADS-box Gene Family AT2G45660 64.8 7.5e-49 190.3
Csa05g00560 CCT,ECH 65 222 MADS-box Gene Family AT2G45660 65.8 1.6e-46 182.6
Csa03g01665 CCT,ECH 1 159 MADS-box Gene Family AT2G45660 56.6 3.4e-41 164.9
Csa03g04509 . 1 218 MADS-box Gene Family AT4G37940 56.3 3.7e-59 224.9
Csa04g01173 . 1 226 MADS-box Gene Family AT4G37940 51.3 8.0e-54 207.2
Csa06g03095 . 1 151 MADS-box Gene Family AT4G37940 67.1 1.6e-49 193.0
Csa06g03115 . 1 229 MADS-box Gene Family AT2G22540 64.2 2.8e-71 265.4
Csa02g02211 . 1 227 MADS-box Gene Family AT2G22540 52.5 1.4e-54 209.9
Csa04g01180 . 1 152 MADS-box Gene Family AT2G22540 53.8 1.3e-36 150.2
Csa06g03115 . 1 225 MADS-box Gene Family AT4G24540 58.0 1.0e-59 226.9
Csa02g02211 . 1 227 MADS-box Gene Family AT4G24540 54.6 2.3e-56 215.7
Csa04g01180 . 1 167 MADS-box Gene Family AT4G24540 52.0 1.3e-38 156.8
Csa05g00560 CCT,ECH 65 209 MADS-box Gene Family AT5G62165 67.6 3.6e-48 188.0
Csa03g01665 CCT,ECH 1 151 MADS-box Gene Family AT5G62165 58.8 2.1e-43 172.2
Csa05g00336 . 1 147 MADS-box Gene Family AT5G62165 61.2 1.9e-41 165.6
Csa06g00602 CCT,ECH 1 154 MADS-box Gene Family AT5G62165 56.5 2.5e-41 165.2
Csa03g00940 CCT,ECH 1 146 MADS-box Gene Family AT5G62165 58.2 2.1e-40 162.2
Csa04g01173 . 1 142 MADS-box Gene Family AT2G14210 76.9 2.5e-56 215.7
Csa03g04509 . 1 142 MADS-box Gene Family AT2G14210 74.1 1.7e-52 203.0
Csa06g03095 . 1 138 MADS-box Gene Family AT2G14210 67.1 5.4e-43 171.4
Csa06g03772 . 49 165 MADS-box Gene Family AT1G29960 55.6 7.9e-38 153.3
Csa03g01665 CCT,ECH 1 145 MADS-box Gene Family AT5G51870 53.8 1.2e-40 163.3
Csa05g00560 CCT,ECH 62 208 MADS-box Gene Family AT5G51870 56.2 3.0e-39 158.7
Csa05g00336 . 1 147 MADS-box Gene Family AT5G51870 53.7 8.1e-37 150.6
Csa04g01008 . 1 241 MADS-box Gene Family AT3G30260 50.2 1.6e-50 196.4
Csa06g02093 . 1 178 MADS-box Gene Family AT3G30260 58.4 1.1e-46 183.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001118 4 2 3 6 3 2 3 2 2 1 2 2 3 3 2 2 2 2 3 2 2 2 2 1 3 1 2 6 5 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31694 PF01486 K-box 6.30E-19 No_clan Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00560 Csa_Chr05 FPKM 2.785114 4.753935 6.364155 6.315878 19.424276 19.821966 19.223076 12.825397 12.378178 12.715361