Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00572 ATGGAGATTAAGCTGAAATGTAACTGTGGCGAAACCAAATGCTTGGAATGGGCCGTCGTTGAGTTACAAGGCGTGGTTGAACCTCAATCCACCTTCCAAGATCGCCTTCAAAACCTCGAAATCGGCATTCTATGTCGACCCTCCGCTCAGGAAGTGTATACTTTTACAGTAGGGTACCATGAGCTGACAGGAAGCAAAATTTCTTTGAAGAAGCCATTGTTGGTGTTGAAGAAAACGAGGTCTGTGGATGAGGATCAGAGTAGCGATACTAAATCGGGTAATGCAGAGTTGGAAGTGATTGGGATCATTAGGCAGCGGATTCTGTTTAAGACCAGACCAAAGGCACTCATATCCAAACCACAGCCATTGGTTAAGGAAAGATCCCGTGCTTCAGGATCTGCAGTGACAGGCCAAACAACATGA 423 45.86 MEIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLEIGILCRPSAQEVYTFTVGYHELTGSKISLKKPLLVLKKTRSVDEDQSSDTKSGNAELEVIGIIRQRILFKTRPKALISKPQPLVKERSRASGSAVTGQTT* 141
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3767050 3770125 + CsaV3_5G005720.1 Csa05g00572 528959

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00572 140 PANTHER CHROMOSOME TRANSMISSION FIDELITY PROTEIN 8 1 132 - -
Csa05g00572 140 Pfam Ctf8 48 114 IPR018607 GO:0007064|GO:0031390
Csa05g00572 140 MobiDBLite consensus disorder prediction 120 140 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00572 K11270 CTF8; chromosome transmission fidelity protein 8 - csv:101209450 276.944
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g368 . . . . . . . . Cmo16g00222 . . Cma15g01404 . Car15g01265 . . . . . . . . . . Cla01g00539 Cam01g0562 Cec01g0553 Cco01g0577 Clacu01g0559 Cmu01g0531 Cre09g1979 . . . . Lsi07g00102 Csa05g00572 Chy09g01074 . . . . . . . . . . . Cmo15g01475 . Cma04g00350 . Car04g00324 . . . . . . . . . Cla07g01606 Cam07g1698 Cec07g1796 Cco07g1759 Clacu07g1683 Cmu07g1650 Cre07g2022 Lsi09g00581 . . Cme09g01604
Vvi16g650 Blo06g01116 . . . . . . . . . . Cma15g01099 . . . . . . . . . . . . . . . . . . . . . Cone14ag0096 Cone15ag0102 . Csa05g00572 Chy09g00933 . . . . . . Bpe12g00421 Bma08g00338 . . . . . . . . . Cpe13g00047 . . . . . . . . . . . . . . Lsi09g00581 . . Cme09g01460
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010128 0 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 2 0 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00572 Csa_Chr05 FPKM 1.913537 1.591238 11.354912 11.272926 4.518011 3.581534 3.256427 4.21904 3.90417 4.237418