Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00573 ATGAGTGGAAAAGAATCAAAAAGTGGTCCACGGCGCCACGTGAAATGGGATGAAAGTAATATTGGTCAAATTGAAGCAAATAAACCTGTGAGACAGAAAATTACCGAACCTAAGACGCCTTATCATCCCATGATCGATGATGATGATTCTCTCTCTCCTGTGCGGGACAATTTTGACTTGTGTGTTGGTGATGCAATGCATGCCGAAGCCATTCGAACTGCATTGAATGATGTGGCTTCCTCAAGTGGTAAAAGCAGCCAGCGATCCAGTGGTTGGACATCTTCTGAGGATGAATCAGATGCCATGGACCAAGATGAAGAAGACAAGGGAAATTTGAGCTTTAAGGAACATAGAAGAGCACACTATGACGAATTTAGGAAAATTAGAGAACTGCGGAGGAATGGGTCACTTTTAGTAGACGAAGACGATGAAGATGATGTTGATCTAAGAGCTATAAGCAAAAAAGAAAAAACATCCCACTGA 483 42.03 MSGKESKSGPRRHVKWDESNIGQIEANKPVRQKITEPKTPYHPMIDDDDSLSPVRDNFDLCVGDAMHAEAIRTALNDVASSSGKSSQRSSGWTSSEDESDAMDQDEEDKGNLSFKEHRRAHYDEFRKIRELRRNGSLLVDEDDEDDVDLRAISKKEKTSH* 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3771381 3776833 + CsaV3_5G005730.1 Csa05g00573 528960

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00573 160 Pfam Protein phosphatase inhibitor 2 (IPP-2) 14 143 IPR007062 GO:0004864|GO:0009966|GO:0043666
Csa05g00573 160 PANTHER PROTEIN GLC8-LIKE ISOFORM X1 11 151 - -
Csa05g00573 160 MobiDBLite consensus disorder prediction 1 19 - -
Csa05g00573 160 PANTHER PROTEIN PHOSPHATASE INHIBITOR 11 151 IPR007062 GO:0004864|GO:0009966|GO:0043666
Csa05g00573 160 MobiDBLite consensus disorder prediction 75 116 - -
Csa05g00573 160 MobiDBLite consensus disorder prediction 133 160 - -
Csa05g00573 160 MobiDBLite consensus disorder prediction 1 54 - -
Csa05g00573 160 MobiDBLite consensus disorder prediction 40 54 - -
Csa05g00573 160 MobiDBLite consensus disorder prediction 75 97 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00573 K16833 PPP1R2, IPP2; protein phosphatase inhibitor 2 - csv:101209205 283.108
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g648 . Blo15g00162 . . . Bpe07g00944 . . . . . . . Car15g01019 . . . . . . . . . . Cla01g00539 Cam01g0562 Cec01g0553 Cco01g0577 Clacu01g0559 Cmu01g0531 Cre09g1979 Cone1ag1149 Cone5ag0858 . . . Csa05g00573 Chy09g00932 . . . Bda06g00677 Bda15g00734 . Bpe12g00420 Bma08g00339 . . . Cmo15g01157 . . . . . Cpe13g00046 Bhi12g00545 . . . . . Lcy12g1230 . . . . . . . . . . Cme09g01459
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006255 3 2 1 1 2 1 2 1 1 1 0 1 1 1 1 1 1 2 2 1 1 1 0 1 2 0 0 3 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00573 Csa_Chr05 FPKM 7.129385 7.834018 13.453471 13.838481 4.051151 3.426619 4.138436 0.776373 1.005951 1.489162