Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00580 ATGTTGATTCCTTCCTTTTCCATTCTTCTTCCATCTCTTCTTCTTCTCATACCTCCAATTTTTATTATTCTCAAACGCATCAAATCTCCTTCTTTAAAAAAACTCCCACTTCCTCCTGGTCCAAATCCATGGCCAATCTTAGGAAATCTCCCTCAAATTGGTCAAAATGCTCACATTTCCATCACCCAATTTGCAAATATCTATGGCCCTTTAATCTCCCTCAAGCTCGGAGCTCAGCGTCTGGTCGTGGCTTCTTCTCCTGCCACTGCCACTGCAGTTCTCAAGACGCATGATCGCTTTCTCTCCAATCGATACATCTTGCAAATGACCCCTGATAGAGCTCTCTACAATCAACACTCTCTTGTTTTCTCCCCTGAATGTGGGGATCATTGGAAGAATTTGAGGTCAATTTGTAAAGCGAACTTGTTTACAGCTAAAGCAATTGAATCGCAAGCTATTTTGAGAGAGAAGAAGATGAAGGAATTAGTGGAATTTTTGGAATCAAAACAGGGATCTGTCGTGAAGATTAAAGATTTTGTTTTTACCTCTGTTTTCAATACACTTTCTAACTTGATTTTTTCGATGGATTTGCTTGATTTTGTTGGCGATGGGTTTAACGGGATTAAAGGGTCTTTCAAGAAAATGATGGATTTGGGTTTGACTCCAAATTTGGCTGATTTTTATCCATTGTTGAGAAGGTTTGATCTTCAAGGTCTTAGAAAGAAAGCTGCCATTTACATGAATGAAGTTGATTCTTTGTGGGGGATTCTTATTAAAGAAAGAAGAGAAATTCATTGTCAACAAGGTTCAGCTTCAAGTGATTTCTTGGATGTTTTGATTCAAAGTGGATTCAGTGATCAACAAATCAATTACTTGATCAATGAATTGCTATTTGCAGCCACAGACACAACTACAACAACAGTGGAATGGGCAATGTCAGAGATTCTAAAAGACAAAGACATACTAAACAAAGCAAGGGAGGAAATAAAGAAGGTAGCAAAGGAAAGTCCCGCCATTGATGAATCCAACATTTCTAAGCTTCAATATCTATGGAGTTGTGTGAAAGAAACCCTAAGACTACACCCACCTGTCCCATTTCTTCTTCCACGTTTAGCTCCAATGGACTGTGAAGTTATGGGATACTCAATCCCAAAAGACAGTATGATTTTTGTCAATGTTTGGGGAATTGGGAGAGACCCTTCAATTTGGGAAGATTCTCAAACGTTCAATCCTGAAAGATTTGATGTTGGTTGTGGTAATAATGTGGATTTTAAAGGGTACGATTATAGGTATTTGCCATTTGGTGGAGGAAGAAGAATTTGCCCTGGTCTGCCAATGGCCATTGTGCAAGTGCCTTTGATTTTAGCCACATTACTTCACAACTTTGAATGGTCACTTCCTAATGGTGAAGATTTATCAAAGTTGGATTTGAATGGAAGGCTTGGTGTAACATTGCAAAAGTATGAAACTCTTAAACTTATTCCTAAAAGGAGGCTTGTTTGA 1503 38.52 MLIPSFSILLPSLLLLIPPIFIILKRIKSPSLKKLPLPPGPNPWPILGNLPQIGQNAHISITQFANIYGPLISLKLGAQRLVVASSPATATAVLKTHDRFLSNRYILQMTPDRALYNQHSLVFSPECGDHWKNLRSICKANLFTAKAIESQAILREKKMKELVEFLESKQGSVVKIKDFVFTSVFNTLSNLIFSMDLLDFVGDGFNGIKGSFKKMMDLGLTPNLADFYPLLRRFDLQGLRKKAAIYMNEVDSLWGILIKERREIHCQQGSASSDFLDVLIQSGFSDQQINYLINELLFAATDTTTTTVEWAMSEILKDKDILNKAREEIKKVAKESPAIDESNISKLQYLWSCVKETLRLHPPVPFLLPRLAPMDCEVMGYSIPKDSMIFVNVWGIGRDPSIWEDSQTFNPERFDVGCGNNVDFKGYDYRYLPFGGGRRICPGLPMAIVQVPLILATLLHNFEWSLPNGEDLSKLDLNGRLGVTLQKYETLKLIPKRRLV* 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3804954 3812938 + CsaV3_5G005800.1 Csa05g00580 528967

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00580 500 Gene3D Cytochrome P450 22 498 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00580 500 SUPERFAMILY Cytochrome P450 38 498 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00580 500 PRINTS E-class P450 group I signature 65 84 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00580 500 PRINTS E-class P450 group I signature 308 334 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00580 500 PRINTS E-class P450 group I signature 351 369 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00580 500 PRINTS E-class P450 group I signature 431 441 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00580 500 PRINTS E-class P450 group I signature 288 305 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00580 500 PRINTS E-class P450 group I signature 441 464 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00580 500 PRINTS E-class P450 group I signature 392 416 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00580 500 PANTHER CYTOCHROME P450 71B11-RELATED 11 496 - -
Csa05g00580 500 PANTHER (S)-N-METHYLCOCLAURINE 3'-HYDROXYLASE ISOZYME 1-LIKE 11 496 - -
Csa05g00580 500 Pfam Cytochrome P450 38 482 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00580 500 PRINTS P450 superfamily signature 432 441 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00580 500 PRINTS P450 superfamily signature 299 316 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00580 500 PRINTS P450 superfamily signature 441 452 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00580 500 PRINTS P450 superfamily signature 352 363 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00580 500 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 434 443 IPR017972 GO:0005506|GO:0016705
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00580 - - - csv:116403724 896.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00580 Csa-Chr5:3804954 Csa05g00347 Csa-Chr5:2223926 1.22E-102 dispersed
Csa05g00579 Csa-Chr5:3800743 Csa05g00580 Csa-Chr5:3804954 1.16E-73 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g606 . Blo15g00156 . . Bpe03g00135 Bpe07g00949 Bma10g01211 . . . . . . . . . . . . . . . . . Cla01g00545 . . . . . . . Cone5ag0838 . . . Csa05g00580 Chy09g00925 . Blo07g00422 Blo09g00081 Bda06g00671 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi09g00589 . . Cme09g01454
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000969 6 2 3 2 3 2 1 3 3 2 3 2 1 1 1 2 2 11 1 3 2 3 2 3 3 3 0 2 4 4 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00580 Csa_Chr05 FPKM 44.314583 47.433426 33.223331 32.831642 38.14193 37.506405 39.103443 45.492546 43.2342 44.925297