Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa05g00586 | ATGGCAGCTTCTCGGGTGGCTGGAGGATTAGCTCAATCTTCCTCAAGTTCTGGGATTTTTTTCCAAGGAGATGGGCAGTCCAAGGCTACCGTTAAATCTCACTTGGGCTCATATGGAAACTCATCAAATTCAATTCCAGGAACTGGCCATTCAAATTTGGGTCCAGTTTCTGGGGACACAAATGGTGTCTTTAATAGTGTCGCAAATTCGGGACCAAGTGTTGGGGCAAGTTCTTTGGTTACAGATGCAAATTCTGCACTTTCAGGTGGGCCTCACTTGCAGAGAAGTCCAAGTATGAATGCAGAATCATACATGCGATTACCTACGTCGCCTATGTCTTTTACATCAAATAACATGAGTATCTCAGGTGCATCGCTCATTGATGCATCTTCTGTACTGCAGCACAATTCTCAGCAGGATCACAATGCTTCCCAGTTGCACACCCAGGCACAGGCCCGACAAGTTTCTTCAGGTGATGCATCGCTGTCGAATTCAAAAACCGTTCAAGCTTCACTCCCCATGGGTGCACGTGTCTCTGGATCTCTCATGACAGATCCCAATAGTTATTCTCAGTCACAGAAGAAGCCACGTTTGGATATTAAGCAGGATGATTTTCTGCAACAGCAGGTTTTACAGCAGCTACTGCAGAGACAAGATTCCATGCAATTGCAAGGTCGTAATACGCCTCAGCTGCAAGCAGCATTGTTTCAGCAGCAACAGAGACTACGGCAGCAACAACAAATTTTTCAGTCTTTACCTCCTTTGCAGAGAGCTCATATGCAGCAGCAGCAGCAGATACAGTTGAGGCAGCAGCTTCAGCAACAGGCAATACAGCCTGTAAATGCTATGAAGCGGCCTCATGATGGTGGTGTATGTGCTCGGCGGCTAATGCAGTACCTATACCATCAGCGTCAAAGGCCTGCTGATAATAGTATTGCCTATTGGAGGAAGTTCGTGACTGAGTATTATTCTCCTCGTGCAAAGAAAAGATGGTGTTTATCATTATATAACAATGTTGGACATCATGCACTTGGTGTTTTCCCTCAAGCAGCTATGGATGCATGGCAGTGTGACATTTGTGGATCAAAATCTGGACGGGGATTTGAGGCTTCCTTTGAAGTCCTTCCTAGACTCAATGAGATCAAGTTTGGCAGTGGAGTCATTGATGAGCTATTGTTCTTAGATATGCCACGGGAATTCAGATATTCATCTGGAATTATGATGTTAGAATATGGAAAAGCGGTTCAAGAGAGTGTGTATGAGCAACTTCGTGTGGTTCGTGAGGGACAGCTTCGTATCATATTTACTCATGAACTGAAGATATTGGCATGGGAGTTTTGTGCAAGACGACATGAAGAACTTCTACCTCGTAGACTGGTTGCACCTCAGGTGAATCAATTGGTCCAGGTGGCACAGAAATGCCAGAGCACTATTGCTGAAGGAGGAACTGATGGGGCTTCTCAGCAGGACTTACAAGCAAATAGCAATATGGTTTTGACAGCTGGGCAGCAGCTTGCCAAGAGTCTGGAGTTGCAGTCGCTGAATGATTTGGGGTTCTCTAAAAGATACGTTAGATGCTTGCAGATATCAGAGGTTGTCAATAGCATGAAAGATTTGATCGATTTCTGCAGGGAGCAGAAAACTGGACCAGTTGAGGGTTTGAAAAGTTATCCTCAGCACGCCACAGCGAAGCTGCAGATGCAAAAAATGCAAGAGATTGAACAGGTTGCTAATGCTCAGGGTCTGCCAACCGATCGTAGCACCCTTGGTAGAATGGTCTCCCTGCATCCTGGGCTGAACAACCAAATGAATAGCCAAAATCAACTAGCCAGCAGAGGAACTTTGAGCGGATCGGCACAAGCTGCGTTGGCATTGTCTAACTACCAGAATCTCCTAATGAGACAGAACTCAATGAATTCAACAAGTTCACACGCACTCCAGCAGGAGACATCATCGTCATTCAATACTACAAACCAGAGTCCTTCATCAAGCTTTCATGGGACAACCGCCATAACATCTGCACCAATGCAGAACTTGCCCAGCAGTGGTCTTTCAAGTCCTAATTTGCCTCAACAACAATCTCAAGTTCAACATCAACTGCATCAGCGGCCGAACACCAACAACTTACTCATGCATAGTACGCAAGGTAACACTAACAATAATCAGGCTATGCAACATCAGATGATCCAGCAGCTACTCCAGATATCTAATAACAGTGGGGGAGGGCAACCGCAACAGCAACCACAACCGCAACAGCAACCGCTTTCTGGATCCAACACAAAAGTAAGCGTTGCTGGAACTTATACAGGCTATGGAGCCAGCAACTCCTCTGTGACGGCTGCAGGCACAGCCAATGCATCTTGTAGTAACACGCCGGCCCCAAGCCGAAGTAACAGTTTCAAAAGTGCTTCAACTGGTGATGTATCAGCAGCCGGTGCTCGTAGCGGCAGTGGGTTCAACCAAAGAAGTGCAGATTTGCCACAAAATCTTCAATTGGATGATGATATAATCCAGGACATAGCCCATGATTTTACGGATAATGGGTTCTTTAACAATGATCTTGACGATAATATGTGCCTTATCTGGAAAGGTTAA | 2595 | 45.66 | MAASRVAGGLAQSSSSSGIFFQGDGQSKATVKSHLGSYGNSSNSIPGTGHSNLGPVSGDTNGVFNSVANSGPSVGASSLVTDANSALSGGPHLQRSPSMNAESYMRLPTSPMSFTSNNMSISGASLIDASSVLQHNSQQDHNASQLHTQAQARQVSSGDASLSNSKTVQASLPMGARVSGSLMTDPNSYSQSQKKPRLDIKQDDFLQQQVLQQLLQRQDSMQLQGRNTPQLQAALFQQQQRLRQQQQIFQSLPPLQRAHMQQQQQIQLRQQLQQQAIQPVNAMKRPHDGGVCARRLMQYLYHQRQRPADNSIAYWRKFVTEYYSPRAKKRWCLSLYNNVGHHALGVFPQAAMDAWQCDICGSKSGRGFEASFEVLPRLNEIKFGSGVIDELLFLDMPREFRYSSGIMMLEYGKAVQESVYEQLRVVREGQLRIIFTHELKILAWEFCARRHEELLPRRLVAPQVNQLVQVAQKCQSTIAEGGTDGASQQDLQANSNMVLTAGQQLAKSLELQSLNDLGFSKRYVRCLQISEVVNSMKDLIDFCREQKTGPVEGLKSYPQHATAKLQMQKMQEIEQVANAQGLPTDRSTLGRMVSLHPGLNNQMNSQNQLASRGTLSGSAQAALALSNYQNLLMRQNSMNSTSSHALQQETSSSFNTTNQSPSSSFHGTTAITSAPMQNLPSSGLSSPNLPQQQSQVQHQLHQRPNTNNLLMHSTQGNTNNNQAMQHQMIQQLLQISNNSGGGQPQQQPQPQQQPLSGSNTKVSVAGTYTGYGASNSSVTAAGTANASCSNTPAPSRSNSFKSASTGDVSAAGARSGSGFNQRSADLPQNLQLDDDIIQDIAHDFTDNGFFNNDLDDNMCLIWKG* | 865 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 3864305 | 3871304 | + | CsaV3_5G005860.1 | Csa05g00586 | 528973 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa05g00586 | 864 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Csa05g00586 | 864 | Pfam | LIM-domain binding protein | 295 | 555 | IPR029005 | - | |
Csa05g00586 | 864 | MobiDBLite | consensus disorder prediction | 177 | 196 | - | - | |
Csa05g00586 | 864 | MobiDBLite | consensus disorder prediction | 8 | 24 | - | - | |
Csa05g00586 | 864 | MobiDBLite | consensus disorder prediction | 782 | 825 | - | - | |
Csa05g00586 | 864 | MobiDBLite | consensus disorder prediction | 134 | 166 | - | - | |
Csa05g00586 | 864 | PANTHER | LIM DOMAIN-BINDING PROTEIN | 155 | 856 | IPR029005 | - | |
Csa05g00586 | 864 | PANTHER | LIM DOMAIN-BINDING PROTEIN | 5 | 148 | IPR029005 | - | |
Csa05g00586 | 864 | MobiDBLite | consensus disorder prediction | 639 | 701 | - | - | |
Csa05g00586 | 864 | PANTHER | LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED | 5 | 148 | - | - | |
Csa05g00586 | 864 | PANTHER | LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED | 155 | 856 | - | - | |
Csa05g00586 | 864 | MobiDBLite | consensus disorder prediction | 181 | 195 | - | - | |
Csa05g00586 | 864 | MobiDBLite | consensus disorder prediction | 736 | 761 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Csa03g01685 | Csa05g00586 | CCT | |
Csa03g01685 | Csa05g00586 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa06g01917 | Csa-Chr6:17297174 | Csa05g00586 | Csa-Chr5:3864305 | 6.23E-115 | transposed | |
Csa06g02175 | Csa-Chr6:19601789 | Csa05g00586 | Csa-Chr5:3864305 | 3.39E-116 | transposed | |
Csa03g01685 | Csa-Chr3:12638830 | Csa05g00586 | Csa-Chr5:3864305 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa05g00586 | - | - | csv:101207744 | 1502.65 |