Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00586 ATGGCAGCTTCTCGGGTGGCTGGAGGATTAGCTCAATCTTCCTCAAGTTCTGGGATTTTTTTCCAAGGAGATGGGCAGTCCAAGGCTACCGTTAAATCTCACTTGGGCTCATATGGAAACTCATCAAATTCAATTCCAGGAACTGGCCATTCAAATTTGGGTCCAGTTTCTGGGGACACAAATGGTGTCTTTAATAGTGTCGCAAATTCGGGACCAAGTGTTGGGGCAAGTTCTTTGGTTACAGATGCAAATTCTGCACTTTCAGGTGGGCCTCACTTGCAGAGAAGTCCAAGTATGAATGCAGAATCATACATGCGATTACCTACGTCGCCTATGTCTTTTACATCAAATAACATGAGTATCTCAGGTGCATCGCTCATTGATGCATCTTCTGTACTGCAGCACAATTCTCAGCAGGATCACAATGCTTCCCAGTTGCACACCCAGGCACAGGCCCGACAAGTTTCTTCAGGTGATGCATCGCTGTCGAATTCAAAAACCGTTCAAGCTTCACTCCCCATGGGTGCACGTGTCTCTGGATCTCTCATGACAGATCCCAATAGTTATTCTCAGTCACAGAAGAAGCCACGTTTGGATATTAAGCAGGATGATTTTCTGCAACAGCAGGTTTTACAGCAGCTACTGCAGAGACAAGATTCCATGCAATTGCAAGGTCGTAATACGCCTCAGCTGCAAGCAGCATTGTTTCAGCAGCAACAGAGACTACGGCAGCAACAACAAATTTTTCAGTCTTTACCTCCTTTGCAGAGAGCTCATATGCAGCAGCAGCAGCAGATACAGTTGAGGCAGCAGCTTCAGCAACAGGCAATACAGCCTGTAAATGCTATGAAGCGGCCTCATGATGGTGGTGTATGTGCTCGGCGGCTAATGCAGTACCTATACCATCAGCGTCAAAGGCCTGCTGATAATAGTATTGCCTATTGGAGGAAGTTCGTGACTGAGTATTATTCTCCTCGTGCAAAGAAAAGATGGTGTTTATCATTATATAACAATGTTGGACATCATGCACTTGGTGTTTTCCCTCAAGCAGCTATGGATGCATGGCAGTGTGACATTTGTGGATCAAAATCTGGACGGGGATTTGAGGCTTCCTTTGAAGTCCTTCCTAGACTCAATGAGATCAAGTTTGGCAGTGGAGTCATTGATGAGCTATTGTTCTTAGATATGCCACGGGAATTCAGATATTCATCTGGAATTATGATGTTAGAATATGGAAAAGCGGTTCAAGAGAGTGTGTATGAGCAACTTCGTGTGGTTCGTGAGGGACAGCTTCGTATCATATTTACTCATGAACTGAAGATATTGGCATGGGAGTTTTGTGCAAGACGACATGAAGAACTTCTACCTCGTAGACTGGTTGCACCTCAGGTGAATCAATTGGTCCAGGTGGCACAGAAATGCCAGAGCACTATTGCTGAAGGAGGAACTGATGGGGCTTCTCAGCAGGACTTACAAGCAAATAGCAATATGGTTTTGACAGCTGGGCAGCAGCTTGCCAAGAGTCTGGAGTTGCAGTCGCTGAATGATTTGGGGTTCTCTAAAAGATACGTTAGATGCTTGCAGATATCAGAGGTTGTCAATAGCATGAAAGATTTGATCGATTTCTGCAGGGAGCAGAAAACTGGACCAGTTGAGGGTTTGAAAAGTTATCCTCAGCACGCCACAGCGAAGCTGCAGATGCAAAAAATGCAAGAGATTGAACAGGTTGCTAATGCTCAGGGTCTGCCAACCGATCGTAGCACCCTTGGTAGAATGGTCTCCCTGCATCCTGGGCTGAACAACCAAATGAATAGCCAAAATCAACTAGCCAGCAGAGGAACTTTGAGCGGATCGGCACAAGCTGCGTTGGCATTGTCTAACTACCAGAATCTCCTAATGAGACAGAACTCAATGAATTCAACAAGTTCACACGCACTCCAGCAGGAGACATCATCGTCATTCAATACTACAAACCAGAGTCCTTCATCAAGCTTTCATGGGACAACCGCCATAACATCTGCACCAATGCAGAACTTGCCCAGCAGTGGTCTTTCAAGTCCTAATTTGCCTCAACAACAATCTCAAGTTCAACATCAACTGCATCAGCGGCCGAACACCAACAACTTACTCATGCATAGTACGCAAGGTAACACTAACAATAATCAGGCTATGCAACATCAGATGATCCAGCAGCTACTCCAGATATCTAATAACAGTGGGGGAGGGCAACCGCAACAGCAACCACAACCGCAACAGCAACCGCTTTCTGGATCCAACACAAAAGTAAGCGTTGCTGGAACTTATACAGGCTATGGAGCCAGCAACTCCTCTGTGACGGCTGCAGGCACAGCCAATGCATCTTGTAGTAACACGCCGGCCCCAAGCCGAAGTAACAGTTTCAAAAGTGCTTCAACTGGTGATGTATCAGCAGCCGGTGCTCGTAGCGGCAGTGGGTTCAACCAAAGAAGTGCAGATTTGCCACAAAATCTTCAATTGGATGATGATATAATCCAGGACATAGCCCATGATTTTACGGATAATGGGTTCTTTAACAATGATCTTGACGATAATATGTGCCTTATCTGGAAAGGTTAA 2595 45.66 MAASRVAGGLAQSSSSSGIFFQGDGQSKATVKSHLGSYGNSSNSIPGTGHSNLGPVSGDTNGVFNSVANSGPSVGASSLVTDANSALSGGPHLQRSPSMNAESYMRLPTSPMSFTSNNMSISGASLIDASSVLQHNSQQDHNASQLHTQAQARQVSSGDASLSNSKTVQASLPMGARVSGSLMTDPNSYSQSQKKPRLDIKQDDFLQQQVLQQLLQRQDSMQLQGRNTPQLQAALFQQQQRLRQQQQIFQSLPPLQRAHMQQQQQIQLRQQLQQQAIQPVNAMKRPHDGGVCARRLMQYLYHQRQRPADNSIAYWRKFVTEYYSPRAKKRWCLSLYNNVGHHALGVFPQAAMDAWQCDICGSKSGRGFEASFEVLPRLNEIKFGSGVIDELLFLDMPREFRYSSGIMMLEYGKAVQESVYEQLRVVREGQLRIIFTHELKILAWEFCARRHEELLPRRLVAPQVNQLVQVAQKCQSTIAEGGTDGASQQDLQANSNMVLTAGQQLAKSLELQSLNDLGFSKRYVRCLQISEVVNSMKDLIDFCREQKTGPVEGLKSYPQHATAKLQMQKMQEIEQVANAQGLPTDRSTLGRMVSLHPGLNNQMNSQNQLASRGTLSGSAQAALALSNYQNLLMRQNSMNSTSSHALQQETSSSFNTTNQSPSSSFHGTTAITSAPMQNLPSSGLSSPNLPQQQSQVQHQLHQRPNTNNLLMHSTQGNTNNNQAMQHQMIQQLLQISNNSGGGQPQQQPQPQQQPLSGSNTKVSVAGTYTGYGASNSSVTAAGTANASCSNTPAPSRSNSFKSASTGDVSAAGARSGSGFNQRSADLPQNLQLDDDIIQDIAHDFTDNGFFNNDLDDNMCLIWKG* 865
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3864305 3871304 + CsaV3_5G005860.1 Csa05g00586 528973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00586 864 MobiDBLite consensus disorder prediction 1 24 - -
Csa05g00586 864 Pfam LIM-domain binding protein 295 555 IPR029005 -
Csa05g00586 864 MobiDBLite consensus disorder prediction 177 196 - -
Csa05g00586 864 MobiDBLite consensus disorder prediction 8 24 - -
Csa05g00586 864 MobiDBLite consensus disorder prediction 782 825 - -
Csa05g00586 864 MobiDBLite consensus disorder prediction 134 166 - -
Csa05g00586 864 PANTHER LIM DOMAIN-BINDING PROTEIN 155 856 IPR029005 -
Csa05g00586 864 PANTHER LIM DOMAIN-BINDING PROTEIN 5 148 IPR029005 -
Csa05g00586 864 MobiDBLite consensus disorder prediction 639 701 - -
Csa05g00586 864 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 5 148 - -
Csa05g00586 864 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 155 856 - -
Csa05g00586 864 MobiDBLite consensus disorder prediction 181 195 - -
Csa05g00586 864 MobiDBLite consensus disorder prediction 736 761 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g01685 Csa05g00586 CCT
Csa03g01685 Csa05g00586 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01917 Csa-Chr6:17297174 Csa05g00586 Csa-Chr5:3864305 6.23E-115 transposed
Csa06g02175 Csa-Chr6:19601789 Csa05g00586 Csa-Chr5:3864305 3.39E-116 transposed
Csa03g01685 Csa-Chr3:12638830 Csa05g00586 Csa-Chr5:3864305 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00586 - - csv:101207744 1502.65