Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00589 ATGGATTTTTCTGATGCTTCTTCGTCTTCCCATCGTTCCACTCTTTCCGACGACGAGCTTCTTCTGGCGTCTCGATACCCCAAGAAGCGAGCGGGGAGAAAGAAGTTTAAGGAAACTCGTCATCCTATTTATCGTGGTGTGCGACTGAGGAATTCTGGTAAGTGGGTTTGTGAAGTTAGAGAGCCTAATAAGAAGACACGGATTTGGCTTGGAACTTTCCCCACTGCTGAGATGGCTGCTCGAGCTCATGATGTGGCTGCCATCGCTCTTAGGGGAAGGTCGGCTTGTCTTAATTTTGCTGACTCTGCTTCCACGCTTCACATTCCGGCTAGTGTTGATCCTAAGGATATTCAGAGGGCTGCGGCGGAGGCTGCCGAGGCATTCCGGCCGCAGGATGATGAGTTGACGCCGGCGGTGGTGGAAGAGGAGGGGTTTTATTTGGATGAGGAAGTGGAGTTTGGGATGCCCGGGTTGTTGACGGATATGGCGGAGGCAATGTTGTTGCCGCCGCCCAATTGTGTGGGGAATTACGACAATGACCACTTTGGGGCTAATTCTATGGATTTTGATGCCGACATGTCGTTGTGGAGTTACTCCATTTGA 603 51.24 MDFSDASSSSHRSTLSDDELLLASRYPKKRAGRKKFKETRHPIYRGVRLRNSGKWVCEVREPNKKTRIWLGTFPTAEMAARAHDVAAIALRGRSACLNFADSASTLHIPASVDPKDIQRAAAEAAEAFRPQDDELTPAVVEEEGFYLDEEVEFGMPGLLTDMAEAMLLPPPNCVGNYDNDHFGANSMDFDADMSLWSYSI* 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3899628 3900230 + CsaV3_5G005890.1 Csa05g00589 528976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00589 200 ProSiteProfiles AP2/ERF domain profile. 43 100 IPR001471 GO:0003700|GO:0006355
Csa05g00589 200 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR 3 200 - -
Csa05g00589 200 SMART rav1_2 43 106 IPR001471 GO:0003700|GO:0006355
Csa05g00589 200 Gene3D AP2/ERF domain 43 101 IPR036955 GO:0003700|GO:0006355
Csa05g00589 200 CDD AP2 42 102 IPR001471 GO:0003700|GO:0006355
Csa05g00589 200 Pfam AP2 domain 42 92 IPR001471 GO:0003700|GO:0006355
Csa05g00589 200 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 3 200 IPR045277 GO:0003700
Csa05g00589 200 SUPERFAMILY DNA-binding domain 43 102 IPR016177 GO:0003677
Csa05g00589 200 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Csa05g00589 200 PRINTS Ethylene responsive element binding protein signature 66 82 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g01676 Csa05g00589 CCT
Csa03g01676 Csa05g00589 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00324 Csa-Chr5:2025742 Csa05g00589 Csa-Chr5:3899628 1.02E-39 dispersed
Csa05g00325 Csa-Chr5:2039646 Csa05g00589 Csa-Chr5:3899628 8.22E-61 dispersed
Csa05g00589 Csa-Chr5:3899628 Csa06g02658 Csa-Chr6:23400570 1.84E-32 dispersed
Csa06g00865 Csa-Chr6:6942444 Csa05g00589 Csa-Chr5:3899628 1.47E-31 dispersed
Csa05g00589 Csa-Chr5:3899628 Csa03g01676 Csa-Chr3:12548365 2.98E-80 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31695 PF00847 AP2 1.50E-14 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00589 - - csv:101207745 391.349