Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00601 ATGTCTAATTCTGATCATACTAATGGCGTCTCCAATGGCGCTACCATCGACACTCACAAGAATCACTCCTCTTCCAATGGAGCTCTCGTTGTTAAAAAGCCTCCTTCTAAGGATCGTCATAGTAAGGTTGATGGTCGTGGCCGTCGTATCCGTATGCCTATCATCTGTGCCGCTCGAGTTTTCCAGCTCACTCGTGAACTTGGTCATAAGTCCGACGGTCAAACCATCGAGTGGCTTCTTCGTCAAGCTGAGCCTTCTATTATTGCTGCTACTGGTACTGGTACTACTCCTGCTAATTTCTCCTCTGTTTCTCTTTCCGTTAGAGGAAATGGCGGCGGCTCTGCTTCTCTCTCTTCCCCTTCTTCCACTACTTCTACTCTTTCCCTCTCACGTCCTCAACCTCTTTCCGGTCCCACGCCGTTTATTCTCGGCAAGCGTGTTAGGTCCGACGATGATGCTAAAGACGATGCCTTAGGAGTGGGTCAAGCGGTTGGGTCCATAGTGGGTCCGACGGGGCCTGGTGGGTATTGGGCGATTCCGGCTAGACCCGATTATGGCCAGGTTTGGAGTTTTGCTGCCGCGGCTCCGTCGGAGATGGTGGTTCAACCAGGGGGGATTGCTCAACAAGCTTCGTTGTTTGCTCAACAGCAGCAGCCGATTAGAGAGGCGTCGGCGGCCAGAGTGGGGAATTACCTTCCTGGTCATCTGAATTTACTGGCGTCTTTGTCCGGTGGAGGTGGTTCTGGACGGCGGGAAGATGACCCTCGTTAA 771 52.53 MSNSDHTNGVSNGATIDTHKNHSSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFSSVSLSVRGNGGGSASLSSPSSTTSTLSLSRPQPLSGPTPFILGKRVRSDDDAKDDALGVGQAVGSIVGPTGPGGYWAIPARPDYGQVWSFAAAAPSEMVVQPGGIAQQASLFAQQQQPIREASAARVGNYLPGHLNLLASLSGGGGSGRREDDPR* 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3972251 3973021 - CsaV3_5G006010.1 Csa05g00601 528988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00601 256 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 1 253 - -
Csa05g00601 256 MobiDBLite consensus disorder prediction 1 30 - -
Csa05g00601 256 MobiDBLite consensus disorder prediction 33 47 - -
Csa05g00601 256 Pfam TCP family transcription factor 36 121 IPR017887 -
Csa05g00601 256 MobiDBLite consensus disorder prediction 1 47 - -
Csa05g00601 256 MobiDBLite consensus disorder prediction 109 140 - -
Csa05g00601 256 ProSiteProfiles TCP domain profile. 36 90 IPR017887 -
Csa05g00601 256 MobiDBLite consensus disorder prediction 109 135 - -
Csa05g00601 256 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 253 IPR005333 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00601 Csa-Chr5:3972251 Csa05g01450 Csa-Chr5:15790556 1.74E-99 dispersed
Csa06g01215 Csa-Chr6:10281150 Csa05g00601 Csa-Chr5:3972251 7.28E-28 dispersed
Csa05g00601 Csa-Chr5:3972251 Csa05g02440 Csa-Chr5:26363833 2.71E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31696 PF03634 TCP 1.70E-32 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00601 K16221 - csv:101206050 433.335