Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00601 ATGTCTAATTCTGATCATACTAATGGCGTCTCCAATGGCGCTACCATCGACACTCACAAGAATCACTCCTCTTCCAATGGAGCTCTCGTTGTTAAAAAGCCTCCTTCTAAGGATCGTCATAGTAAGGTTGATGGTCGTGGCCGTCGTATCCGTATGCCTATCATCTGTGCCGCTCGAGTTTTCCAGCTCACTCGTGAACTTGGTCATAAGTCCGACGGTCAAACCATCGAGTGGCTTCTTCGTCAAGCTGAGCCTTCTATTATTGCTGCTACTGGTACTGGTACTACTCCTGCTAATTTCTCCTCTGTTTCTCTTTCCGTTAGAGGAAATGGCGGCGGCTCTGCTTCTCTCTCTTCCCCTTCTTCCACTACTTCTACTCTTTCCCTCTCACGTCCTCAACCTCTTTCCGGTCCCACGCCGTTTATTCTCGGCAAGCGTGTTAGGTCCGACGATGATGCTAAAGACGATGCCTTAGGAGTGGGTCAAGCGGTTGGGTCCATAGTGGGTCCGACGGGGCCTGGTGGGTATTGGGCGATTCCGGCTAGACCCGATTATGGCCAGGTTTGGAGTTTTGCTGCCGCGGCTCCGTCGGAGATGGTGGTTCAACCAGGGGGGATTGCTCAACAAGCTTCGTTGTTTGCTCAACAGCAGCAGCCGATTAGAGAGGCGTCGGCGGCCAGAGTGGGGAATTACCTTCCTGGTCATCTGAATTTACTGGCGTCTTTGTCCGGTGGAGGTGGTTCTGGACGGCGGGAAGATGACCCTCGTTAA 771 52.53 MSNSDHTNGVSNGATIDTHKNHSSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFSSVSLSVRGNGGGSASLSSPSSTTSTLSLSRPQPLSGPTPFILGKRVRSDDDAKDDALGVGQAVGSIVGPTGPGGYWAIPARPDYGQVWSFAAAAPSEMVVQPGGIAQQASLFAQQQQPIREASAARVGNYLPGHLNLLASLSGGGGSGRREDDPR* 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3972251 3973021 - CsaV3_5G006010.1 Csa05g00601 528988

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00601 256 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 1 253 - -
Csa05g00601 256 MobiDBLite consensus disorder prediction 1 30 - -
Csa05g00601 256 MobiDBLite consensus disorder prediction 33 47 - -
Csa05g00601 256 Pfam TCP family transcription factor 36 121 IPR017887 -
Csa05g00601 256 MobiDBLite consensus disorder prediction 1 47 - -
Csa05g00601 256 MobiDBLite consensus disorder prediction 109 140 - -
Csa05g00601 256 ProSiteProfiles TCP domain profile. 36 90 IPR017887 -
Csa05g00601 256 MobiDBLite consensus disorder prediction 109 135 - -
Csa05g00601 256 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 253 IPR005333 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00601 K16221 TCP21, CHE; transcription factor TCP21 (protein CCA1 HIKING EXPEDITION) - csv:101206050 433.335
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00601 Csa-Chr5:3972251 Csa05g01450 Csa-Chr5:15790556 1.74E-99 dispersed
Csa06g01215 Csa-Chr6:10281150 Csa05g00601 Csa-Chr5:3972251 7.28E-28 dispersed
Csa05g00601 Csa-Chr5:3972251 Csa05g02440 Csa-Chr5:26363833 2.71E-39 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa05g01450 . 44 265 TCP Transcription Factor Family AT5G23280 62.0 5.9e-64 241.1
Csa05g00601 . 34 257 TCP Transcription Factor Family AT5G23280 59.1 8.8e-60 227.3
Csa06g00596 . 65 324 TCP Transcription Factor Family AT2G45680 54.1 6.8e-66 248.1
Csa05g02440 . 70 164 TCP Transcription Factor Family AT3G47620 89.7 8.0e-41 165.2
Csa01g00533 CCT,ECH 37 137 TCP Transcription Factor Family AT3G47620 82.2 1.2e-39 161.4
Csa05g02171 . 47 148 TCP Transcription Factor Family AT1G69690 78.8 2.7e-37 152.9
Csa03g02480 . 42 295 TCP Transcription Factor Family AT3G27010 54.6 1.2e-58 223.8
Csa06g00805 . 36 268 TCP Transcription Factor Family AT3G27010 51.6 1.1e-51 200.7
Csa05g00601 . 4 254 TCP Transcription Factor Family AT5G08330 54.8 2.8e-63 238.8
Csa05g01450 . 30 263 TCP Transcription Factor Family AT5G08330 59.3 9.0e-62 233.8
Csa04g01035 . 38 172 TCP Transcription Factor Family AT3G02150 57.4 1.1e-36 151.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001822 4 2 1 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31696 PF03634 TCP 1.70E-32 No_clan Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00601 Csa_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.23516