Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa05g00601 | ATGTCTAATTCTGATCATACTAATGGCGTCTCCAATGGCGCTACCATCGACACTCACAAGAATCACTCCTCTTCCAATGGAGCTCTCGTTGTTAAAAAGCCTCCTTCTAAGGATCGTCATAGTAAGGTTGATGGTCGTGGCCGTCGTATCCGTATGCCTATCATCTGTGCCGCTCGAGTTTTCCAGCTCACTCGTGAACTTGGTCATAAGTCCGACGGTCAAACCATCGAGTGGCTTCTTCGTCAAGCTGAGCCTTCTATTATTGCTGCTACTGGTACTGGTACTACTCCTGCTAATTTCTCCTCTGTTTCTCTTTCCGTTAGAGGAAATGGCGGCGGCTCTGCTTCTCTCTCTTCCCCTTCTTCCACTACTTCTACTCTTTCCCTCTCACGTCCTCAACCTCTTTCCGGTCCCACGCCGTTTATTCTCGGCAAGCGTGTTAGGTCCGACGATGATGCTAAAGACGATGCCTTAGGAGTGGGTCAAGCGGTTGGGTCCATAGTGGGTCCGACGGGGCCTGGTGGGTATTGGGCGATTCCGGCTAGACCCGATTATGGCCAGGTTTGGAGTTTTGCTGCCGCGGCTCCGTCGGAGATGGTGGTTCAACCAGGGGGGATTGCTCAACAAGCTTCGTTGTTTGCTCAACAGCAGCAGCCGATTAGAGAGGCGTCGGCGGCCAGAGTGGGGAATTACCTTCCTGGTCATCTGAATTTACTGGCGTCTTTGTCCGGTGGAGGTGGTTCTGGACGGCGGGAAGATGACCCTCGTTAA | 771 | 52.53 | MSNSDHTNGVSNGATIDTHKNHSSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFSSVSLSVRGNGGGSASLSSPSSTTSTLSLSRPQPLSGPTPFILGKRVRSDDDAKDDALGVGQAVGSIVGPTGPGGYWAIPARPDYGQVWSFAAAAPSEMVVQPGGIAQQASLFAQQQQPIREASAARVGNYLPGHLNLLASLSGGGGSGRREDDPR* | 257 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 3972251 | 3973021 | - | CsaV3_5G006010.1 | Csa05g00601 | 528988 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa05g00601 | 256 | PANTHER | TRANSCRIPTION FACTOR TCP FAMILY-RELATED | 1 | 253 | - | - | |
Csa05g00601 | 256 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Csa05g00601 | 256 | MobiDBLite | consensus disorder prediction | 33 | 47 | - | - | |
Csa05g00601 | 256 | Pfam | TCP family transcription factor | 36 | 121 | IPR017887 | - | |
Csa05g00601 | 256 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
Csa05g00601 | 256 | MobiDBLite | consensus disorder prediction | 109 | 140 | - | - | |
Csa05g00601 | 256 | ProSiteProfiles | TCP domain profile. | 36 | 90 | IPR017887 | - | |
Csa05g00601 | 256 | MobiDBLite | consensus disorder prediction | 109 | 135 | - | - | |
Csa05g00601 | 256 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 1 | 253 | IPR005333 | GO:0003700 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa05g00601 | Csa-Chr5:3972251 | Csa05g01450 | Csa-Chr5:15790556 | 1.74E-99 | dispersed | |
Csa06g01215 | Csa-Chr6:10281150 | Csa05g00601 | Csa-Chr5:3972251 | 7.28E-28 | dispersed | |
Csa05g00601 | Csa-Chr5:3972251 | Csa05g02440 | Csa-Chr5:26363833 | 2.71E-39 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31696 | PF03634 | TCP | 1.70E-32 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa05g00601 | K16221 | - | csv:101206050 | 433.335 |