Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa05g00625 | ATGGCTTACGTGGCCAAATGTACTAATAATTCTCCTCCAACTCCCATCAGTGTTAATAATAATCCAAATAATCCTTTATCTTTCTCCCCAATGTCTTCTTCCCCACCCACTTCTCAACCATCCTCCCCTCCGCCCCCTGCGGTGGTTCTCAGCCCCTGCGCTGCCTGTAAGATCCTCCGTCGCCGCTGCGTCGAGAAATGCGTTTTGGCTCCTTATTTCCCTCCCACTGACCCTCTTAAGTTCACCATTGCCCATAGAGTTTTTGGAGCTAGCAATATCATCAAGTTCCTGCAAGAGCTTCCCGAGTGCCAAAGAACGGATGCAGTGAGCAGTATGGTATACGAAGCAAATGCTCGTCTGAGAGATCCAGTTTACGGTAGTGCAGGCGCAATTTGCCAACTGCAAAAGCAAGTGAGCGAACTACAAGCTCAACTAGCCAAGGCTAGGGCAGAGGTGGCCAATATGCAGCAACAACAAGCCAACTTACTAGCCTTAATTTGCATGGAAATGAGGCAATCACCGGAGCCTGTTTGGCAGCCGCAACTGGTGGACACTACATGCTTCCTCGATGACGCCACCCTCAGCTCACCATGGGAGCCACTCTGGACGTGA | 612 | 50.65 | MAYVAKCTNNSPPTPISVNNNPNNPLSFSPMSSSPPTSQPSSPPPPAVVLSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQQQQANLLALICMEMRQSPEPVWQPQLVDTTCFLDDATLSSPWEPLWT* | 204 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 4131728 | 4133244 | - | CsaV3_5G006250.1 | Csa05g00625 | 529012 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa05g00625 | 203 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 34 | 185 | - | - | |
| Csa05g00625 | 203 | Pfam | Lateral organ boundaries (LOB) domain | 52 | 149 | IPR004883 | - | |
| Csa05g00625 | 203 | Coils | Coil | 131 | 165 | - | - | |
| Csa05g00625 | 203 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
| Csa05g00625 | 203 | ProSiteProfiles | LOB domain profile. | 51 | 152 | IPR004883 | - | |
| Csa05g00625 | 203 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 1-LIKE | 34 | 185 | - | - | |
| Csa05g00625 | 203 | MobiDBLite | consensus disorder prediction | 7 | 35 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa05g00625 | Csa-Chr5:4131728 | Csa06g01169 | Csa-Chr6:9817253 | 6.46E-50 | dispersed | |
| Csa02g01004 | Csa-Chr2:9696483 | Csa05g00625 | Csa-Chr5:4131728 | 4.11E-23 | transposed | |
| Csa03g00541 | Csa-Chr3:4536999 | Csa05g00625 | Csa-Chr5:4131728 | 1.16E-10 | transposed | |
| Csa05g01940 | Csa-Chr5:22575066 | Csa05g00625 | Csa-Chr5:4131728 | 1.78E-16 | transposed | |
| Csa05g00625 | Csa-Chr5:4131728 | Csa05g01777 | Csa-Chr5:21124562 | 4.40E-63 | wgd | |
| Csa05g00625 | Csa-Chr5:4131728 | Csa06g01663 | Csa-Chr6:14608411 | 6.71E-77 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 31699 | PF03195 | LOB | 7.40E-40 | No_clan | Csa | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa05g00625 | - | - | csv:101204854 | 313.923 |