Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00631 ATGGCCGACCCTCCCACCAGTCCTCCCGGCTGCAGCCATGAAAGCGGCGGTGAACAAAGCCCTAACACTGCTGCTGCCGTTCGTGAACAAGATCGTTTCCTTCCCATCGCTAATATTAGTCGGATCATGAAGAAAGCTTTACCTGCTAATGGCAAGATCGCTAAAGACGCTAAAGATACCGTCCAGGAATGTGTTTCTGAATTCATTAGCTTCGTTACCAGCGAGGCGAGTGATAAGTGTCAGAAAGAGAAGAGGAAGACTATTAATGGTGATGATTTGCTTTGGGCTATGGCCACGTTGGGATTTGAGGAATATATTGATCCCCTTAAATCCTACCTTAATAGATACAGAGAGTTGGAGTGTGATGCTAAAGGATCTTCTAGGGGTGGTGATGAGTCTGCTAAAAGAGATGCAGTTGGAGTCTTGCCTGGTCAAAATTCCCAGCAATACATGCAGCCGGGATCATTGACCTACATTAACACTCAAGCTATATTTGGGCACAAGACTGTAGAGGACTGGCAATGA 525 46.29 MADPPTSPPGCSHESGGEQSPNTAAAVREQDRFLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLNRYRELECDAKGSSRGGDESAKRDAVGVLPGQNSQQYMQPGSLTYINTQAIFGHKTVEDWQ* 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4179690 4183598 - CsaV3_5G006310.1 Csa05g00631 529018

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00631 174 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 33 97 IPR003958 -
Csa05g00631 174 PRINTS CCAAT-binding transcription factor subunit A signature 61 79 - -
Csa05g00631 174 PRINTS CCAAT-binding transcription factor subunit A signature 80 98 - -
Csa05g00631 174 PRINTS CCAAT-binding transcription factor subunit A signature 99 117 - -
Csa05g00631 174 MobiDBLite consensus disorder prediction 1 25 - -
Csa05g00631 174 SUPERFAMILY Histone-fold 30 132 IPR009072 GO:0046982
Csa05g00631 174 Gene3D Histone, subunit A 22 152 IPR009072 GO:0046982
Csa05g00631 174 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 157 IPR027113 GO:0001228|GO:0006355|GO:0016602
Csa05g00631 174 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 157 - -
Csa05g00631 174 ProSitePatterns NF-YB/HAP3 subunit signature. 64 80 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00631 K08065 NFYB, HAP3; nuclear transcription Y subunit beta - csv:101223123 330.102
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00494 Csa-Chr4:3242143 Csa05g00631 Csa-Chr5:4179690 2.99E-55 dispersed
Csa05g00631 Csa-Chr5:4179690 Csa06g00967 Csa-Chr6:7816316 2.02E-60 dispersed
Csa01g00351 Csa-Chr1:2186973 Csa05g00631 Csa-Chr5:4179690 1.61E-18 transposed
Csa03g03243 Csa-Chr3:29752680 Csa05g00631 Csa-Chr5:4179690 1.96E-78 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g00425 . 40 180 CCAAT-HAP3 Transcription Factor Family AT5G47670 68.3 1.5e-48 189.9
Csa03g00428 . 16 163 CCAAT-HAP3 Transcription Factor Family AT5G47670 62.2 1.8e-46 183.0
Csa03g00426 . 3 150 CCAAT-HAP3 Transcription Factor Family AT5G47670 62.2 2.3e-46 182.6
Csa03g00427 . 65 173 CCAAT-HAP3 Transcription Factor Family AT5G47670 77.1 2.2e-44 176.0
Csa06g00967 CCT,ECH 6 117 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.7 6.8e-38 154.5
Csa03g00425 . 21 202 CCAAT-HAP3 Transcription Factor Family AT1G21970 56.8 1.0e-49 193.7
Csa03g00428 . 47 185 CCAAT-HAP3 Transcription Factor Family AT1G21970 64.6 1.2e-47 186.8
Csa03g00426 . 34 172 CCAAT-HAP3 Transcription Factor Family AT1G21970 63.9 1.6e-47 186.4
Csa03g00427 . 31 193 CCAAT-HAP3 Transcription Factor Family AT1G21970 57.8 1.4e-46 183.3
Csa04g00494 . 9 138 CCAAT-HAP3 Transcription Factor Family AT1G21970 53.7 2.4e-38 156.0
Csa06g00967 CCT,ECH 1 129 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.2 3.4e-57 218.0
Csa03g00408 . 1 120 CCAAT-HAP3 Transcription Factor Family AT4G14540 80.2 3.4e-49 191.4
Csa04g00494 . 29 135 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.1 7.2e-47 183.7
Csa03g03243 . 22 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 82.5 3.9e-45 177.9
Csa05g00631 . 25 120 CCAAT-HAP3 Transcription Factor Family AT4G14540 82.3 6.3e-43 170.6
Csa05g00631 . 1 121 CCAAT-HAP3 Transcription Factor Family AT2G38880 77.7 4.3e-49 191.0
Csa03g03243 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 2.8e-48 188.3
Csa06g00967 CCT,ECH 1 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 1.3e-42 169.5
Csa03g00408 . 1 110 CCAAT-HAP3 Transcription Factor Family AT2G38880 71.2 8.6e-42 166.8
Csa04g00494 . 16 122 CCAAT-HAP3 Transcription Factor Family AT2G38880 73.8 2.5e-41 165.2
Csa03g00408 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G47810 76.0 1.4e-39 159.5
Csa06g00967 CCT,ECH 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 5.5e-39 157.5
Csa04g00494 . 32 140 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.9 6.0e-38 154.1
Csa03g03243 . 1 174 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.6 1.2e-63 239.6
Csa05g00631 . 7 148 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.9 5.9e-55 210.7
Csa06g00967 CCT,ECH 6 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.6 1.2e-44 176.4
Csa04g00494 . 9 136 CCAAT-HAP3 Transcription Factor Family AT2G37060 63.9 3.7e-41 164.9
Csa03g00408 . 6 113 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.5 6.3e-41 164.1
Csa04g00494 . 19 134 CCAAT-HAP3 Transcription Factor Family AT2G13570 74.4 1.2e-44 176.8
Csa06g00967 CCT,ECH 22 123 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 3.4e-44 175.3
Csa03g03243 . 7 125 CCAAT-HAP3 Transcription Factor Family AT2G13570 68.5 5.8e-44 174.5
Csa03g00408 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 80.2 2.1e-41 166.0
Csa05g00631 . 9 128 CCAAT-HAP3 Transcription Factor Family AT2G13570 63.4 1.5e-39 159.8
Csa06g00967 CCT,ECH 1 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.4 5.1e-52 201.1
Csa03g00408 . 1 117 CCAAT-HAP3 Transcription Factor Family AT5G47640 81.5 4.8e-50 194.5
Csa04g00494 . 27 134 CCAAT-HAP3 Transcription Factor Family AT5G47640 78.7 6.1e-45 177.6
Csa05g00631 . 14 140 CCAAT-HAP3 Transcription Factor Family AT5G47640 68.7 6.1e-45 177.6
Csa03g03243 . 11 129 CCAAT-HAP3 Transcription Factor Family AT5G47640 70.6 5.1e-44 174.5
Csa03g03243 . 12 174 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.4 1.5e-61 232.6
Csa05g00631 . 12 137 CCAAT-HAP3 Transcription Factor Family AT3G53340 82.5 1.7e-54 209.1
Csa06g00967 CCT,ECH 6 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.7 2.5e-45 178.7
Csa03g00408 . 6 113 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.4 1.3e-41 166.4
Csa04g00494 . 20 124 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.3 6.4e-41 164.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000266 8 6 6 8 9 3 3 3 3 2 3 3 6 4 4 6 3 10 6 3 4 4 4 3 4 3 2 16 9 4 152
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31700 PF00808 CBFD_NFYB_HMF 4.20E-28 CL0012 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00631 Csa_Chr05 FPKM 8.662482 7.531322 8.091295 7.389218 10.803815 11.58843 12.076804 7.672429 7.45832 9.241698