Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00631 ATGGCCGACCCTCCCACCAGTCCTCCCGGCTGCAGCCATGAAAGCGGCGGTGAACAAAGCCCTAACACTGCTGCTGCCGTTCGTGAACAAGATCGTTTCCTTCCCATCGCTAATATTAGTCGGATCATGAAGAAAGCTTTACCTGCTAATGGCAAGATCGCTAAAGACGCTAAAGATACCGTCCAGGAATGTGTTTCTGAATTCATTAGCTTCGTTACCAGCGAGGCGAGTGATAAGTGTCAGAAAGAGAAGAGGAAGACTATTAATGGTGATGATTTGCTTTGGGCTATGGCCACGTTGGGATTTGAGGAATATATTGATCCCCTTAAATCCTACCTTAATAGATACAGAGAGTTGGAGTGTGATGCTAAAGGATCTTCTAGGGGTGGTGATGAGTCTGCTAAAAGAGATGCAGTTGGAGTCTTGCCTGGTCAAAATTCCCAGCAATACATGCAGCCGGGATCATTGACCTACATTAACACTCAAGCTATATTTGGGCACAAGACTGTAGAGGACTGGCAATGA 525 46.29 MADPPTSPPGCSHESGGEQSPNTAAAVREQDRFLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLNRYRELECDAKGSSRGGDESAKRDAVGVLPGQNSQQYMQPGSLTYINTQAIFGHKTVEDWQ* 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4179690 4183598 - CsaV3_5G006310.1 Csa05g00631 529018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00631 174 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 33 97 IPR003958 -
Csa05g00631 174 PRINTS CCAAT-binding transcription factor subunit A signature 61 79 - -
Csa05g00631 174 PRINTS CCAAT-binding transcription factor subunit A signature 80 98 - -
Csa05g00631 174 PRINTS CCAAT-binding transcription factor subunit A signature 99 117 - -
Csa05g00631 174 MobiDBLite consensus disorder prediction 1 25 - -
Csa05g00631 174 SUPERFAMILY Histone-fold 30 132 IPR009072 GO:0046982
Csa05g00631 174 Gene3D Histone, subunit A 22 152 IPR009072 GO:0046982
Csa05g00631 174 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 157 IPR027113 GO:0001228|GO:0006355|GO:0016602
Csa05g00631 174 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 157 - -
Csa05g00631 174 ProSitePatterns NF-YB/HAP3 subunit signature. 64 80 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00494 Csa-Chr4:3242143 Csa05g00631 Csa-Chr5:4179690 2.99E-55 dispersed
Csa05g00631 Csa-Chr5:4179690 Csa06g00967 Csa-Chr6:7816316 2.02E-60 dispersed
Csa01g00351 Csa-Chr1:2186973 Csa05g00631 Csa-Chr5:4179690 1.61E-18 transposed
Csa03g03243 Csa-Chr3:29752680 Csa05g00631 Csa-Chr5:4179690 1.96E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31700 PF00808 CBFD_NFYB_HMF 4.20E-28 CL0012 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00631 K08065 - csv:101223123 330.102