Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00635 ATGATGTTGGATCTCAACGATTCGATTACAAACCGCGACGAAACACCCACGAGTCGGATTGTAATGGAAGATTCCGAGACTTCAAATTCCTCCGTCGTTAATGCCACCGACGAGGTTTCCAACAGCAGAGACGAAGATTCCTCTGTTTTAATCTTCGATATCCTCAAAAGAGAAAGCTCCGGCGGCGGCAGTGGCGGCGGCGCGTCGTCGGAATTGGTAACTCAAACGCTTTTTCCAGTCGTCGGAGGATGGGGGGATTCTGGGTCGTCTCCAGTGCCTAGAACCCATTGGTTGAACTTGTCGTCGACGGCAGATTCCGGTGGCGGTGGGGGACCGCCGGAGTTGAGAATTGTACAGCAGAAACAACAGCAGGTGAGAAAAAGCCGCCGTGGGCCACGCTCCCGGAGCTCTCAGTACCGGGGAGTTACCTTTTACCGTCGAACCGGAAGATGGGAATCTCATATTTGGGATTGTGGGAAACAAGTTTATTTGGGTGGGTTTGACACAGCACATGCTGCTGCAAGGGCTTACGATCGAGCGGCAATCAAGTTTAGAGGAGTTGATGCGGACATAAACTTCAATATAAATGATTACGACGAAGATATGAAACAAATGAAAAATCTAAGTAAAGAAGAGTTTGTCCATGTTCTTCGTCGACAAAGTACTGGATTTTCTCGCGGAGGTTCGAAGTTAAGAGGATTGTCTCTTCAAAAATATGGAAGATGGGAAAATCAAATGAGTCAAATCATTGGAAAGAATGGAATTGAGCAGAGGTCTTGCAAAGGGGATGCAATGGTGGATTCAAACAATGGAGCTAATGGGCATAATCTTGATTTGAGCATTGGAGGAATTTTCAACTACCATCTTACTAATTCTCCTCAAAAGCTCAACATTGAGAGACCAAAGAATGAAATCAATGGTTATGCATGTGGTGTGACTGTGGGTGGACAACAACAACCTCATATTCCTCCTTCTATGTGGTCTACTTTTTACTCTGGGTTTTTACCAAATAATGAGGAAAAAGGGAGAGAAAAGAGAAACAACGACTCGACGACGAAGATGTCAACGAGTTGGGGATGGCAAATGCCAACATCAACCACGATGTCGATGTCGATGTCAATGCCAACGACAATTCAAGGGAATATCAGTGGAAAAAACAACAACAGTATGAGTAGTAATAATGGAATAATAGCAAGAGATCAAGAAGCTCATATTTCCAAGATAGTTGCAGCATCATCAGGATTCTCTTCCTCTTCTAATTTTGGTTCACTTTATGCTCAAAACAACAATGCTCTTCACAGTACTCACTGCCCCAATATTTCTTGA 1326 44.34 MMLDLNDSITNRDETPTSRIVMEDSETSNSSVVNATDEVSNSRDEDSSVLIFDILKRESSGGGSGGGASSELVTQTLFPVVGGWGDSGSSPVPRTHWLNLSSTADSGGGGGPPELRIVQQKQQQVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNINDYDEDMKQMKNLSKEEFVHVLRRQSTGFSRGGSKLRGLSLQKYGRWENQMSQIIGKNGIEQRSCKGDAMVDSNNGANGHNLDLSIGGIFNYHLTNSPQKLNIERPKNEINGYACGVTVGGQQQPHIPPSMWSTFYSGFLPNNEEKGREKRNNDSTTKMSTSWGWQMPTSTTMSMSMSMPTTIQGNISGKNNNSMSSNNGIIARDQEAHISKIVAASSGFSSSSNFGSLYAQNNNALHSTHCPNIS* 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4200122 4204337 - CsaV3_5G006350.1 Csa05g00635 529022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00635 441 CDD AP2 138 196 IPR001471 GO:0003700|GO:0006355
Csa05g00635 441 Gene3D AP2/ERF domain 137 196 IPR036955 GO:0003700|GO:0006355
Csa05g00635 441 Pfam AP2 domain 138 186 IPR001471 GO:0003700|GO:0006355
Csa05g00635 441 MobiDBLite consensus disorder prediction 92 106 - -
Csa05g00635 441 SMART rav1_2 138 200 IPR001471 GO:0003700|GO:0006355
Csa05g00635 441 MobiDBLite consensus disorder prediction 23 44 - -
Csa05g00635 441 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SMZ-RELATED 2 428 - -
Csa05g00635 441 Coils Coil 439 441 - -
Csa05g00635 441 MobiDBLite consensus disorder prediction 23 38 - -
Csa05g00635 441 SUPERFAMILY DNA-binding domain 137 195 IPR016177 GO:0003677
Csa05g00635 441 ProSiteProfiles AP2/ERF domain profile. 138 194 IPR001471 GO:0003700|GO:0006355
Csa05g00635 441 MobiDBLite consensus disorder prediction 92 115 - -
Csa05g00635 441 MobiDBLite consensus disorder prediction 337 361 - -
Csa05g00635 441 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 2 428 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00635 Csa-Chr5:4200122 Csa04g01425 Csa-Chr4:14237172 9.03E-11 dispersed
Csa03g03241 Csa-Chr3:29729628 Csa05g00635 Csa-Chr5:4200122 5.36E-65 wgd
Csa05g00635 Csa-Chr5:4200122 Csa06g01688 Csa-Chr6:14811535 2.75E-10 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31701 PF00847 AP2 6.10E-10 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00635 K09284 - csv:101204131 829.32