Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00641 ATGGGGTGGTTTCTTTGTTCAGGAATTTCAAATAAGAAGGAAAAACAGCAGCAGCAGCATCAAGTACACAAGAAGGATGATGATCCGATCCCATCAACTTCAGATGCAGAAAAATTGATGGTAAAGGCAACATTTAATGGGAAGAACGATACTCTGAAAGATGGAGGTGCTGATCAAATTGCAGGACAAACAATTACCTTCTCATTCCGAGAGTTGGCAGCTGCAACAAAGTATTTTAGAGCTGACTGTCTTTTAGGTGAAGGAGGTTTTGGTCAAGTTTATAAAGGACGATTGGAGAGCATAAATCAGGTAGTTGCCATCAAGCAACTTGATCGAAATGGGCTACAAGGAAACAGGGAATTCCTTGTTGAAGTACTAATGTTAAGCCTACTCCATCACCCAAATCTTGTTAATTTAATTGGCTATTGCGCGGATGGTGATCAAAGACTTTTGGTTTATGAATACATGCCATTGGGGTCGTTGGAAGACCATTTACATGATCTCCCACCCGATAAAAAACGACTTGACTGGAATACAAGAATGAAAATAGCTGCTGGTGCTGCAAAGGGCTTAGAGTATTTGCATGACAAGGCTAATCCCCCAGTTATATATCGTGATCTGAAGTGCTCTAACATCCTGCTTGGTGAAGATTACCATCCTAAGTTATCTGATTTTGGCTTGGCAAAATTAGGCCCCGTGGGGGATAACACTCATGTGTCCACGAGGGTGATGGGAACATATGGATACTGTGCTCCAGAGTATGCAATGACAGGCCAGCTCACTTTAAAATCAGACGTTTATAGCTTTGGAGTTGTTCTACTCGAAATTATTACTGGGAGAAAAGCTATTGACAATTCAAGAGCTGCAGGGGAACATAATTTGGTGGCATGGGCACAACCCTTGTTTAAAGACCGAAGGAAATTTTCCCAGATGGCGGATCCATTGCTCCAAGGACAATACCCAGTCAGAGGCTTGTATCAAGCACTTGCAGTAGCTGCAATGTGTGTTCAGGAACAGCCTCATATGCGACCACTTATTGCTGATGTTGTCACAGCTCTTACATACCTTGCTTCCCAAAAATACGACCCCGAAACCCAGCCAGTTCAAAGCGCTCGCAGTAGCTCATCCACACCTAGATCTTCTAGAAGAGAACTGTGA 1158 43.01 MGWFLCSGISNKKEKQQQQHQVHKKDDDPIPSTSDAEKLMVKATFNGKNDTLKDGGADQIAGQTITFSFRELAAATKYFRADCLLGEGGFGQVYKGRLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDLPPDKKRLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGEDYHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSRAAGEHNLVAWAQPLFKDRRKFSQMADPLLQGQYPVRGLYQALAVAAMCVQEQPHMRPLIADVVTALTYLASQKYDPETQPVQSARSSSSTPRSSRREL* 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4259160 4264092 - CsaV3_5G006410.1 Csa05g00641 529028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00641 385 MobiDBLite consensus disorder prediction 6 33 - -
Csa05g00641 385 SUPERFAMILY Protein kinase-like (PK-like) 67 374 IPR011009 -
Csa05g00641 385 Coils Coil 382 385 - -
Csa05g00641 385 MobiDBLite consensus disorder prediction 16 33 - -
Csa05g00641 385 Pfam Protein tyrosine and serine/threonine kinase 84 351 IPR001245 GO:0004672|GO:0006468
Csa05g00641 385 Gene3D Transferase(Phosphotransferase) domain 1 156 377 - -
Csa05g00641 385 SMART serkin_6 79 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g00641 385 MobiDBLite consensus disorder prediction 363 385 - -
Csa05g00641 385 Gene3D Phosphorylase Kinase; domain 1 51 155 - -
Csa05g00641 385 ProSiteProfiles Protein kinase domain profile. 79 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g00641 385 ProSitePatterns Protein kinases ATP-binding region signature. 85 108 IPR017441 GO:0005524
Csa05g00641 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Csa05g00641 385 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL27 12 382 - -
Csa05g00641 385 PANTHER OS07G0668900 PROTEIN 12 382 - -
Csa05g00641 385 MobiDBLite consensus disorder prediction 363 378 - -
Csa05g00641 385 CDD STKc_IRAK 85 354 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01277 Csa-Chr1:8023792 Csa05g00641 Csa-Chr5:4259160 0 dispersed
Csa03g00526 Csa-Chr3:4374615 Csa05g00641 Csa-Chr5:4259160 8.55E-171 transposed
Csa03g01426 Csa-Chr3:10668107 Csa05g00641 Csa-Chr5:4259160 0 transposed
Csa04g02704 Csa-Chr4:26173294 Csa05g00641 Csa-Chr5:4259160 1.32E-163 transposed
Csa06g00794 Csa-Chr6:6377052 Csa05g00641 Csa-Chr5:4259160 0 transposed
Csa06g01204 Csa-Chr6:10211191 Csa05g00641 Csa-Chr5:4259160 4.27E-71 transposed
Csa06g01959 Csa-Chr6:17687348 Csa05g00641 Csa-Chr5:4259160 3.77E-164 transposed
Csa07g01084 Csa-Chr7:10410700 Csa05g00641 Csa-Chr5:4259160 2.41E-19 transposed
Csa07g01499 Csa-Chr7:15365200 Csa05g00641 Csa-Chr5:4259160 2.08E-169 transposed
Csa05g01587 Csa-Chr5:18743303 Csa05g00641 Csa-Chr5:4259160 1.53E-64 transposed
Csa03g03235 Csa-Chr3:29698154 Csa05g00641 Csa-Chr5:4259160 0 wgd
Csa05g00641 Csa-Chr5:4259160 Csa06g01695 Csa-Chr6:14910133 5.69E-168 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78225 PF07714 PK_Tyr_Ser-Thr 1.80E-46 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00641 - - csv:101221705 737.258