Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00646 ATGGTATCTGAAACTTTTATGAAGATTGTATCACCTTGCTGGAAACCGTTAGTCGAAGGCGAAAATTCCAGCAGAGATGGGGATGCAAGTGGTCGGGTTGACGGGCTGTTGTGGTACAAGGATTCTGGCCGCCATATTAATGGTGATTTCTCAATGGCAGTTATTCAGGCAAATAATTTGTTGGAAGATCGTAGCCAACTTGAGTCAGGGCCTCTGAGCTCATACGAATCGGGTCCGGTTGGGACGTTCGTTGGAATTTATGATGGCCACGGAGGACCAGAAGCTGCACAATTCATAAATGATCGCCTTTTCAATAATATGAAGACTTTTCATGATGCAGAATTTATTCCAGAAAATCAGGGAGTATCTGCTGAAATTATTAACAAAGCGTTCTTGGAGACGGAAGAGGAATTTTTGTCTCTTGTAAAGAAACAATGGCTTATTAAGCCTCAAATTGCTTCGGTTGGTTCATGCTGTTTGGTAGGCATAATATGTTGTGGATTACTATATATTGCAAATGCTGGAGATTCTAGAGTGGTGTTGGGAAGATTTGAAAGAACTCATAAAGAGGTTAAAGCCATCCAATTGTCATCTGAGCACAATGCTAGTATTGAATCTGTGAGAGAGGAGTTGCACTCGTTGCATCCCAATGATCCACAGATCGTGGTGCTAAAGCACAAGGTGTGGCGTGTGAAGGGTGTTATACAGGTCTCAAGATCCCTTGGTGATGCTTATCTGAAGAAAACAGAGTTCAACCGAGAGCCTCTTTTGCCAAAGTTCAGATTACCAGAACCATTCCACAAGCCAATACTTAAAGCTGAGCCTGCTATTGTCGTGCAGAAACTGTATCCAGAGGATCAGTTTCTTATATTTGCTTCAGATGGTCTTTGGGAGTATATAAGCAATCAGGAAGCTGTCGACATCGTCCATAGTTGTCCACGCAATGGGGTTGCAAGGAAACTCGTTAAAGCCGCTCTTCATGGAGCTGCCAAAAAAAGAGAGATGAGATACACAGACTTGAAGAAGATTGACCGCGGGGTAAGAAGGCATTTCCACGACGACATCACTGTGATAGTTTTGTTCCTCGATTCGCATCTGATTAGTCGCAGTCCAAGCTACGGACCAATGCTTTCAATCAGAGGAGGTTCTGGTATCCTCGCTAGATCATAG 1170 43.42 MVSETFMKIVSPCWKPLVEGENSSRDGDASGRVDGLLWYKDSGRHINGDFSMAVIQANNLLEDRSQLESGPLSSYESGPVGTFVGIYDGHGGPEAAQFINDRLFNNMKTFHDAEFIPENQGVSAEIINKAFLETEEEFLSLVKKQWLIKPQIASVGSCCLVGIICCGLLYIANAGDSRVVLGRFERTHKEVKAIQLSSEHNASIESVREELHSLHPNDPQIVVLKHKVWRVKGVIQVSRSLGDAYLKKTEFNREPLLPKFRLPEPFHKPILKAEPAIVVQKLYPEDQFLIFASDGLWEYISNQEAVDIVHSCPRNGVARKLVKAALHGAAKKREMRYTDLKKIDRGVRRHFHDDITVIVLFLDSHLISRSPSYGPMLSIRGGSGILARS* 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4308076 4311434 - CsaV3_5G006460.1 Csa05g00646 529033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00646 389 PANTHER ALPHABET, ISOFORM E-RELATED 8 384 - -
Csa05g00646 389 ProSitePatterns PPM-type phosphatase domain signature. 83 91 IPR000222 GO:0043169
Csa05g00646 389 Pfam Protein phosphatase 2C 82 329 IPR001932 -
Csa05g00646 389 ProSiteProfiles PPM-type phosphatase domain profile. 49 362 IPR001932 -
Csa05g00646 389 PANTHER PROTEIN PHOSPHATASE 2C 38-RELATED 8 384 - -
Csa05g00646 389 SUPERFAMILY PP2C-like 44 363 IPR036457 -
Csa05g00646 389 SMART PP2C_4 39 360 IPR001932 -
Csa05g00646 389 CDD PP2Cc 50 362 IPR001932 -
Csa05g00646 389 Gene3D - 39 370 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00055 Csa-Chr3:498307 Csa05g00646 Csa-Chr5:4308076 4.25E-180 dispersed
Csa05g00646 Csa-Chr5:4308076 Csa06g03363 Csa-Chr6:28014814 0 dispersed
Csa07g00117 Csa-Chr7:1051293 Csa05g00646 Csa-Chr5:4308076 5.33E-37 dispersed
Csa03g03224 Csa-Chr3:29655759 Csa05g00646 Csa-Chr5:4308076 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00646 K01102 - csv:101220760 776.163