Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00654 ATGAGAGCTTCAAATGCCAATTTTCTCATCTGGATTCTTTGTGCTTTATGTTTATCATCATCTCTCTTATCAGAATTCACTCCTGATGATAATTTTCTGATTGATTGTGGATCATCCTCCAATAATACAGTGGGAGATCGTTTATTTCTATCTGATGACAACCCGAATGGGAAATCTCTTTCCTCTACAAGTAAAGTATCTACTTCATCTGAATTAGACATGTTCTCATCTCTATTTCAGACTGCAAAAGTATTTGAAACAACTTTTCAATACAACTTCAAAATAAAGAAACAGGGTAGGCATTGGATCCGCCTCTACTTTGACCCCTTTGTTTCTGGGAACTTTAACTTGAGTTTAGCTAAATTCTCAGTTTCTGCTCAAAATATCACACTGCTCAAAGAGTTTCAAATCGAAAGCGGCTCAATAATCAAGGAATATTCTCTGAATCTCACCTCCAGTAATCTTGTTCTTACATTTACTCCCATAGTGAATTCATTTGCCTTCATCAATGCCTTGGAAGTTGTTTCTGTTCCAAATGAACTGATTCCCTTGACTGTCACCAGTGTTGAGAAGGTTGAAAATAGTTTGGGGAACAGGGCACTGGAGACAGTTGCTAGAGTGAACATGGGCAATCGAACCATGCTTCCGGATGATGATACTCTCTCGCGTCTTTGGGTTGCAGATGGTCCATATTTGATGCATAATAATCAGGTTGTCGTTGGAAAGTTTGTGTCAAATCTCACAAAAGTGAATATGACAGGCGGTTTGGAAATTAAGGCTCCTCGTTTTGTGTATGGAACGGCAACACAGTTAGGAGTTGATGGGGATACTTTTGTTAATGTCAATGTATCCTGGTCATTCGACGTTGATCCAGGATATGAATATCTGATTCGTTATCATTTCTGTGATATTATTGATCATTCTTTTGGACCAATGGTCTTCAATGTTTATGTTAACTCATGGAAGGTAGTTCATCTTGATCTTGATAATGTCACTTCAAACATCCGAGGTGCACCCTATGTCCTGGACACCATAGCCAGTCCAATCGACAGCTCTAAGTTCAAAATAAGTGTTGGTCCTACCAATTTTCATGATTTCTCGACCGCCATTCTTAACGGGCTCGAGATTATGAAAATAAGTGATTCTCGGAGGAGCCTCGATGAACCCCCCTTTGGTTTAGACTCAAAGAAAGGTTCCAATGTAAAAGTTGGTCTTATAGCTGGCTTAGTTGCTGGACTGGTTGTCCTTGCTATTTTGGCCACTCTTGTTATTGTACTGTGCAGAAGAAGAAGGAGATCAGCACTTGTCCGTCACTTGAAGGAAGAGGAAAATTTGGGTGTGAATGGTAGAGAAAGCAATTATACCATTGGCTCCGTTGCCTTTTCGAACTCAAAGTTCGGTTATCGATATTCTCTTGCAGCTATTCAGGAAGCTACAGATAATTTTAGTGAAAGTTTAGCCATTGGAGTTGGCGGGTTTGGGAAAGTTTACAAGGGAATGTTGAGGGACAACACAGAAGTGGCAGTGAAAAGAGGAACTTCTAAATCCATGCAGGGTCTTGCAGAGTTTCAAACCGAAATTGAGATGTTATCCCAATTTCGCCACCGTCATTTAGTTTCTCTGATCGGGTACTGTGATGAGCAAAACGAGATGATTATAATTTATGAGTACATGGAAAAAGGGACCCTCAAGGACCATTTGTATGGATCAGAACTTCCAAGTTTAAGCTGGAAACAAAGGCTTGATATTTGCATTGGCTCAGCTAGAGGACTTCACTATCTTCACACTGGCTCCACAAAGGCAATCATACACAGAGATGTCAAAACTGCAAACATTCTTCTTGATCAAAACTACATGGCCAAGGTTGCAGACTTTGGACTCTCGAAGATTGGCCCTGAATTTGACAAGACTCACGTCAGTACAGCAGTGAAAGGAAGCTTTGGCTATCTCGATCCTGAGTATTTAACGATGCAGCAACTGACCGAGAAATCAGATGTGTACTCTTTTGGGGTAGTTATGTTTGAAGTGCTTTGTGGTAGGCCTGTCATTGATCCATCTCTGCCAAGGGAAAAGGTGAATTTAATTGAATGGGTAATGAGAAGGAAGGACAAAGATCAATTGGAGGCGATTGTAGATGCTCGCATTGTCGAACAAATCAAGCTAGAATCATTGAAAAAATATGTTGAAACAGCCGAGAAATGCTTGGCAGAATGCGGCATGGATCGTCCAACAATGGGAAACGTTCTGTGGAATCTGGAGTGTGCACTCCAACTCCAAGGGGATGAAAAATCCCGACATGGAAAGGAATCATCCTCACAAGCTGATCTTTCCAACCATTGGGAGGCGAGCGTATCAACGACTCAATTCAGCACAGGAAGCGCTGTCGATATCGCAAGTATGTCGATGAGTAAGGTATTTGCTCAAATGGTGAGGGAAGATATGAGATAG 2448 41.09 MRASNANFLIWILCALCLSSSLLSEFTPDDNFLIDCGSSSNNTVGDRLFLSDDNPNGKSLSSTSKVSTSSELDMFSSLFQTAKVFETTFQYNFKIKKQGRHWIRLYFDPFVSGNFNLSLAKFSVSAQNITLLKEFQIESGSIIKEYSLNLTSSNLVLTFTPIVNSFAFINALEVVSVPNELIPLTVTSVEKVENSLGNRALETVARVNMGNRTMLPDDDTLSRLWVADGPYLMHNNQVVVGKFVSNLTKVNMTGGLEIKAPRFVYGTATQLGVDGDTFVNVNVSWSFDVDPGYEYLIRYHFCDIIDHSFGPMVFNVYVNSWKVVHLDLDNVTSNIRGAPYVLDTIASPIDSSKFKISVGPTNFHDFSTAILNGLEIMKISDSRRSLDEPPFGLDSKKGSNVKVGLIAGLVAGLVVLAILATLVIVLCRRRRRSALVRHLKEEENLGVNGRESNYTIGSVAFSNSKFGYRYSLAAIQEATDNFSESLAIGVGGFGKVYKGMLRDNTEVAVKRGTSKSMQGLAEFQTEIEMLSQFRHRHLVSLIGYCDEQNEMIIIYEYMEKGTLKDHLYGSELPSLSWKQRLDICIGSARGLHYLHTGSTKAIIHRDVKTANILLDQNYMAKVADFGLSKIGPEFDKTHVSTAVKGSFGYLDPEYLTMQQLTEKSDVYSFGVVMFEVLCGRPVIDPSLPREKVNLIEWVMRRKDKDQLEAIVDARIVEQIKLESLKKYVETAEKCLAECGMDRPTMGNVLWNLECALQLQGDEKSRHGKESSSQADLSNHWEASVSTTQFSTGSAVDIASMSMSKVFAQMVREDMR* 816
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4358095 4361831 - CsaV3_5G006540.1 Csa05g00654 529041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00654 815 SMART serkin_6 482 755 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g00654 815 Pfam Malectin-like domain 34 379 IPR024788 -
Csa05g00654 815 CDD STKc_IRAK 488 753 - -
Csa05g00654 815 SUPERFAMILY Protein kinase-like (PK-like) 464 752 IPR011009 -
Csa05g00654 815 Gene3D Phosphorylase Kinase; domain 1 447 557 - -
Csa05g00654 815 ProSiteProfiles Protein kinase domain profile. 482 756 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g00654 815 Pfam Protein tyrosine and serine/threonine kinase 487 748 IPR001245 GO:0004672|GO:0006468
Csa05g00654 815 ProSitePatterns Protein kinases ATP-binding region signature. 488 510 IPR017441 GO:0005524
Csa05g00654 815 PANTHER RECEPTOR-LIKE PROTEIN KINASE HERK 1 17 807 - -
Csa05g00654 815 Gene3D - 199 380 - -
Csa05g00654 815 Gene3D - 31 178 - -
Csa05g00654 815 Gene3D Transferase(Phosphotransferase) domain 1 558 780 - -
Csa05g00654 815 ProSitePatterns Serine/Threonine protein kinases active-site signature. 602 614 IPR008271 GO:0004672|GO:0006468
Csa05g00654 815 PANTHER OS07G0166700 PROTEIN 17 807 IPR045272 GO:0004714|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00654 Csa-Chr5:4358095 Csa07g02213 Csa-Chr7:20798979 0 dispersed
Csa01g01793 Csa-Chr1:14838693 Csa05g00654 Csa-Chr5:4358095 2.60E-69 transposed
Csa03g00880 Csa-Chr3:7333559 Csa05g00654 Csa-Chr5:4358095 1.92E-67 transposed
Csa04g01709 Csa-Chr4:16488228 Csa05g00654 Csa-Chr5:4358095 4.81E-73 transposed
Csa05g01679 Csa-Chr5:19977864 Csa05g00654 Csa-Chr5:4358095 2.60E-56 transposed
Csa05g00654 Csa-Chr5:4358095 Csa06g01709 Csa-Chr6:15028080 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78226 PF12819 Malectin_like 1.90E-30 CL0202 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00654 - - csv:101203398 1529.61