Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00661 ATGATACTCTCAGAGCCCCCTAAGAGTAACAACACCACCAAATTAATGCACATAAAAGAATTTTTTGGCTTCTCCCACTCTTCCTCTCCAAAATCCATCCACTCCTCTTCTACTTTCACCAACTCTCCTCGTCGGAGACTCCCGCCGCCGACCTATGACCCATCTGAGTCCGCTGCCATGGAAGAGGCCATCGTAAACTCAGAACCCATCATTACGAAATGGGACCCCGATGCTTCTGAGTTCAACAGAATCACCTTCCTCTTCCGCCATGGCAGAGCCGAATCTGAGGAGTTTCTCAACTCTGTCAACAGTCTCCGACGAGCAATGGACTTCTTTATTTCGGCAAATTCCACCTCGTCTGTTCTTGTTATTGCTCAGAAGTTGATGCAGGCCGCTATGAGACGATTGGAGAAGGAGTTTTACCAGATTTTGAGTGAGAATCGCCAGAATCTCGATCCTGAATCCATCTCCAGCAGATCCTCTGACCGGTCAACGGCCGAAGGGGAAACTGTTGGGGATTCTATAACTGAATTCGATAGAGTTTCGGCGGATTTGAAATCCATTGCGGATTGTATGATTGATTCTGGGTATGGGAAAGAGTGTGTTAAAATTTATAAAGTAATCCGAAAATCTATTGTTGATGAAACTCTGTACCGTCTGGGAACAGAGAAATTCAAACTTTCGAGAATTTTGAAATGGAGTTGGGATTCGCTCGAGAACATAATCAAGAACTGGATGAACTCGGTTAAAATCGCGGTGAATACTCTGTTTCGTGGCGAAAGATTTCTCTGCGATCATGTTTTTTCGAGATCGGAAAGAATCAGAGAGTCCTGTTTTTATGAGATCACAAAAGAAGGTGCAATCACTTTATTCAAATTCCCGGAATTAGTCGCAAAAGGGAAGAAAGATTCCGACAAAATCTTCATATTAATGGAGCTTTACGATGCGAATTCTGACGTATTACCGGAAATCGAACTCATATTCGACTCTGTCTCAACGTCCGTCATTAGAACTCAAGCACAAACGTCAATGACGAAACTCGCTGATTCAATCCGCGACATCCTTTGCGAATTTGAATCAACAATTCAAAAAGATTCATCAAAAAACCCAACTCCCGGCGGCGGAATCCACCCATTAACCCAATCAGCAATGAGTTACATCTCCTCTCTCGGAGATTACGCCTCAACCCTCTCCGACATCCTCACCGTCGAAAACTCCCCAATTCCGTCGTCATACATGGAAACCATCGCCGCCGACGACGCACTCTCATCGCCGGTGGCTGCGCAACTGGGCTGGCTAATTCTAGTCCTTCTCTGTAAACTAGACACAAAAGCCGAGGTATACAGAGACGTATCGTTATCATACTTATTCCTAGCAAACAACTTGAATTTCATCGTGAAAACGGTGGCGACGACGAATCTAAAGATGCTAATCGGTGGCGAGTGGGTGGCGAATCATAGAACCAAAGTGAAGGTGTATGCAACGAACTACGAAGCGACGGCGTGGAACAGAGTGATAAAGTCGTTGCCGGAGAGAGGGTCGGAAGAAGTGGGGTCGCCGGAGACGGCGGAGGAGGGGTTGAAGAGGTTTAATGCGGCGTTTGAAGAGGCTTATCGAAAACAAACGTCGTGGAGAGTGGAGGACGGGAATCTGAGAGATGAACTGAAGGTGTCGATAGCGAGAAAAATAGTGCCGATCTACAGAGAGTTTTACGAGGGATGTATTGAGAGAATGAATGTGAATGTGGGCGTGAGATTTTCGCCGGATGATTTGGGTAACTATTTGTCGGATTTGTTTCATGGGGTTTCTTCTTCGGGGAGTTCTTCATCATCATCTTCTTCTTCTGCATTGAAGAGATGA 1860 45.7 MILSEPPKSNNTTKLMHIKEFFGFSHSSSPKSIHSSSTFTNSPRRRLPPPTYDPSESAAMEEAIVNSEPIITKWDPDASEFNRITFLFRHGRAESEEFLNSVNSLRRAMDFFISANSTSSVLVIAQKLMQAAMRRLEKEFYQILSENRQNLDPESISSRSSDRSTAEGETVGDSITEFDRVSADLKSIADCMIDSGYGKECVKIYKVIRKSIVDETLYRLGTEKFKLSRILKWSWDSLENIIKNWMNSVKIAVNTLFRGERFLCDHVFSRSERIRESCFYEITKEGAITLFKFPELVAKGKKDSDKIFILMELYDANSDVLPEIELIFDSVSTSVIRTQAQTSMTKLADSIRDILCEFESTIQKDSSKNPTPGGGIHPLTQSAMSYISSLGDYASTLSDILTVENSPIPSSYMETIAADDALSSPVAAQLGWLILVLLCKLDTKAEVYRDVSLSYLFLANNLNFIVKTVATTNLKMLIGGEWVANHRTKVKVYATNYEATAWNRVIKSLPERGSEEVGSPETAEEGLKRFNAAFEEAYRKQTSWRVEDGNLRDELKVSIARKIVPIYREFYEGCIERMNVNVGVRFSPDDLGNYLSDLFHGVSSSGSSSSSSSSSALKR* 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4442429 4444769 + CsaV3_5G006610.1 Csa05g00661 529048

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00661 619 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 46 611 - -
Csa05g00661 619 SUPERFAMILY Cullin repeat-like 68 600 IPR016159 -
Csa05g00661 619 MobiDBLite consensus disorder prediction 26 55 - -
Csa05g00661 619 MobiDBLite consensus disorder prediction 26 45 - -
Csa05g00661 619 Gene3D Exocyst complex component Exo70 77 608 - -
Csa05g00661 619 Pfam Exo70 exocyst complex subunit 243 597 IPR046364 GO:0000145|GO:0005546|GO:0006887
Csa05g00661 619 PANTHER EXOCYST COMPLEX PROTEIN EXO70 46 611 IPR004140 GO:0000145|GO:0006887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00661 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:101221801 1165.6
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00661 Csa-Chr5:4442429 Csa01g03408 Csa-Chr1:30935673 1.58E-97 dispersed
Csa03g03213 Csa-Chr3:29599876 Csa05g00661 Csa-Chr5:4442429 0 wgd
Csa04g01453 Csa-Chr4:14408827 Csa05g00661 Csa-Chr5:4442429 1.00E-128 wgd
Csa05g00661 Csa-Chr5:4442429 Csa06g01715 Csa-Chr6:15102299 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa05g02705 . 14 652 EXO70 exocyst subunit family AT5G03540 76.7 1.0e-285 979.2
Csa06g02721 . 1 639 EXO70 exocyst subunit family AT5G03540 70.7 6.0e-265 910.2
Csa06g02723 . 1 421 EXO70 exocyst subunit family AT5G03540 68.9 8.8e-168 587.4
Csa06g02722 CCT 1 182 EXO70 exocyst subunit family AT5G03540 74.7 5.3e-72 269.2
Csa06g02721 . 1 639 EXO70 exocyst subunit family AT5G52340 79.8 1.9e-297 1018.1
Csa05g02705 . 16 652 EXO70 exocyst subunit family AT5G52340 74.4 1.1e-271 932.6
Csa06g02723 . 1 421 EXO70 exocyst subunit family AT5G52340 77.9 2.8e-187 652.1
Csa06g02722 CCT 1 182 EXO70 exocyst subunit family AT5G52340 80.2 7.8e-81 298.5
Csa06g02721 . 145 631 EXO70 exocyst subunit family AT5G52350 63.5 1.7e-175 612.8
Csa05g02705 . 151 652 EXO70 exocyst subunit family AT5G52350 60.6 5.4e-169 591.3
Csa06g02723 . 145 421 EXO70 exocyst subunit family AT5G52350 60.1 1.2e-88 324.3
Csa06g02722 CCT 1 182 EXO70 exocyst subunit family AT5G52350 64.3 2.0e-62 237.3
Csa01g02542 . 1 630 EXO70 exocyst subunit family AT5G58430 66.5 7.6e-246 846.7
Csa01g02542 . 1 629 EXO70 exocyst subunit family AT1G07000 52.0 2.3e-175 612.5
Csa04g00293 . 60 673 EXO70 exocyst subunit family AT5G13150 52.6 3.1e-173 605.5
Csa05g01620 . 93 705 EXO70 exocyst subunit family AT5G13990 54.3 4.1e-192 668.3
Csa03g02774 . 12 611 EXO70 exocyst subunit family AT1G72470 64.3 1.3e-213 739.6
Csa03g02774 . 9 607 EXO70 exocyst subunit family AT1G54090 62.3 3.9e-210 728.0
Csa03g02774 . 9 608 EXO70 exocyst subunit family AT3G14090 65.1 8.4e-221 763.5
Csa01g03408 . 14 651 EXO70 exocyst subunit family AT5G50380 61.9 5.6e-226 780.8
Csa01g00963 . 1 635 EXO70 exocyst subunit family AT5G50380 61.8 3.1e-224 775.0
Csa02g02314 . 13 683 EXO70 exocyst subunit family AT4G31540 73.1 4.5e-292 1000.3
Csa05g00661 . 58 601 EXO70 exocyst subunit family AT3G55150 51.7 2.2e-152 536.2
Csa05g00661 . 27 601 EXO70 exocyst subunit family AT2G39380 52.0 3.9e-157 552.0
Csa03g03213 . 27 632 EXO70 exocyst subunit family AT3G09520 54.3 4.0e-178 621.7
Csa06g01715 . 36 613 EXO70 exocyst subunit family AT5G59730 50.2 5.9e-153 538.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006856 2 1 1 2 2 1 0 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00661 Csa_Chr05 FPKM 4.815405 6.28137 2.058699 1.726402 0.608123 0.524948 0.922326 19.71726 19.222702 22.607758