Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00661 ATGATACTCTCAGAGCCCCCTAAGAGTAACAACACCACCAAATTAATGCACATAAAAGAATTTTTTGGCTTCTCCCACTCTTCCTCTCCAAAATCCATCCACTCCTCTTCTACTTTCACCAACTCTCCTCGTCGGAGACTCCCGCCGCCGACCTATGACCCATCTGAGTCCGCTGCCATGGAAGAGGCCATCGTAAACTCAGAACCCATCATTACGAAATGGGACCCCGATGCTTCTGAGTTCAACAGAATCACCTTCCTCTTCCGCCATGGCAGAGCCGAATCTGAGGAGTTTCTCAACTCTGTCAACAGTCTCCGACGAGCAATGGACTTCTTTATTTCGGCAAATTCCACCTCGTCTGTTCTTGTTATTGCTCAGAAGTTGATGCAGGCCGCTATGAGACGATTGGAGAAGGAGTTTTACCAGATTTTGAGTGAGAATCGCCAGAATCTCGATCCTGAATCCATCTCCAGCAGATCCTCTGACCGGTCAACGGCCGAAGGGGAAACTGTTGGGGATTCTATAACTGAATTCGATAGAGTTTCGGCGGATTTGAAATCCATTGCGGATTGTATGATTGATTCTGGGTATGGGAAAGAGTGTGTTAAAATTTATAAAGTAATCCGAAAATCTATTGTTGATGAAACTCTGTACCGTCTGGGAACAGAGAAATTCAAACTTTCGAGAATTTTGAAATGGAGTTGGGATTCGCTCGAGAACATAATCAAGAACTGGATGAACTCGGTTAAAATCGCGGTGAATACTCTGTTTCGTGGCGAAAGATTTCTCTGCGATCATGTTTTTTCGAGATCGGAAAGAATCAGAGAGTCCTGTTTTTATGAGATCACAAAAGAAGGTGCAATCACTTTATTCAAATTCCCGGAATTAGTCGCAAAAGGGAAGAAAGATTCCGACAAAATCTTCATATTAATGGAGCTTTACGATGCGAATTCTGACGTATTACCGGAAATCGAACTCATATTCGACTCTGTCTCAACGTCCGTCATTAGAACTCAAGCACAAACGTCAATGACGAAACTCGCTGATTCAATCCGCGACATCCTTTGCGAATTTGAATCAACAATTCAAAAAGATTCATCAAAAAACCCAACTCCCGGCGGCGGAATCCACCCATTAACCCAATCAGCAATGAGTTACATCTCCTCTCTCGGAGATTACGCCTCAACCCTCTCCGACATCCTCACCGTCGAAAACTCCCCAATTCCGTCGTCATACATGGAAACCATCGCCGCCGACGACGCACTCTCATCGCCGGTGGCTGCGCAACTGGGCTGGCTAATTCTAGTCCTTCTCTGTAAACTAGACACAAAAGCCGAGGTATACAGAGACGTATCGTTATCATACTTATTCCTAGCAAACAACTTGAATTTCATCGTGAAAACGGTGGCGACGACGAATCTAAAGATGCTAATCGGTGGCGAGTGGGTGGCGAATCATAGAACCAAAGTGAAGGTGTATGCAACGAACTACGAAGCGACGGCGTGGAACAGAGTGATAAAGTCGTTGCCGGAGAGAGGGTCGGAAGAAGTGGGGTCGCCGGAGACGGCGGAGGAGGGGTTGAAGAGGTTTAATGCGGCGTTTGAAGAGGCTTATCGAAAACAAACGTCGTGGAGAGTGGAGGACGGGAATCTGAGAGATGAACTGAAGGTGTCGATAGCGAGAAAAATAGTGCCGATCTACAGAGAGTTTTACGAGGGATGTATTGAGAGAATGAATGTGAATGTGGGCGTGAGATTTTCGCCGGATGATTTGGGTAACTATTTGTCGGATTTGTTTCATGGGGTTTCTTCTTCGGGGAGTTCTTCATCATCATCTTCTTCTTCTGCATTGAAGAGATGA 1860 45.7 MILSEPPKSNNTTKLMHIKEFFGFSHSSSPKSIHSSSTFTNSPRRRLPPPTYDPSESAAMEEAIVNSEPIITKWDPDASEFNRITFLFRHGRAESEEFLNSVNSLRRAMDFFISANSTSSVLVIAQKLMQAAMRRLEKEFYQILSENRQNLDPESISSRSSDRSTAEGETVGDSITEFDRVSADLKSIADCMIDSGYGKECVKIYKVIRKSIVDETLYRLGTEKFKLSRILKWSWDSLENIIKNWMNSVKIAVNTLFRGERFLCDHVFSRSERIRESCFYEITKEGAITLFKFPELVAKGKKDSDKIFILMELYDANSDVLPEIELIFDSVSTSVIRTQAQTSMTKLADSIRDILCEFESTIQKDSSKNPTPGGGIHPLTQSAMSYISSLGDYASTLSDILTVENSPIPSSYMETIAADDALSSPVAAQLGWLILVLLCKLDTKAEVYRDVSLSYLFLANNLNFIVKTVATTNLKMLIGGEWVANHRTKVKVYATNYEATAWNRVIKSLPERGSEEVGSPETAEEGLKRFNAAFEEAYRKQTSWRVEDGNLRDELKVSIARKIVPIYREFYEGCIERMNVNVGVRFSPDDLGNYLSDLFHGVSSSGSSSSSSSSSALKR* 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4442429 4444769 + CsaV3_5G006610.1 Csa05g00661 529048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00661 619 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 46 611 - -
Csa05g00661 619 SUPERFAMILY Cullin repeat-like 68 600 IPR016159 -
Csa05g00661 619 MobiDBLite consensus disorder prediction 26 55 - -
Csa05g00661 619 MobiDBLite consensus disorder prediction 26 45 - -
Csa05g00661 619 Gene3D Exocyst complex component Exo70 77 608 - -
Csa05g00661 619 Pfam Exo70 exocyst complex subunit 243 597 IPR046364 GO:0000145|GO:0005546|GO:0006887
Csa05g00661 619 PANTHER EXOCYST COMPLEX PROTEIN EXO70 46 611 IPR004140 GO:0000145|GO:0006887
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00661 Csa-Chr5:4442429 Csa01g03408 Csa-Chr1:30935673 1.58E-97 dispersed
Csa03g03213 Csa-Chr3:29599876 Csa05g00661 Csa-Chr5:4442429 0 wgd
Csa04g01453 Csa-Chr4:14408827 Csa05g00661 Csa-Chr5:4442429 1.00E-128 wgd
Csa05g00661 Csa-Chr5:4442429 Csa06g01715 Csa-Chr6:15102299 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00661 K07195 - csv:101221801 1165.6