Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00673 ATGGTGGGGTCTGAGGAGGATTCGGGTACTTCTGGGAGTGCAGCGGTGCAGCTCTCTGGCAGTCGGAAAATGTTCTGGCGCTCGGCTTCATGGTCTGCATCACGTTCCTCACTTCACCATCCTGAAGTGAACAGAGAAGGTGGAGACCCCAATGGGAATCTTGGCGATGGTAATGGACCAAGCCGAATTTTTCCTGCTCCATTAACTCCAAGATCACAGCAGCATTGCAAAGCAAGGTCGTGTTTGCCTCCTTTACAGCCTTTGTCGATTGCTCGGCGAAGCTTGGATGAATGGCCAAAGGCGGGGTCCGATGATATTGGTGAATGGCCGCAACCTCCTACTCCAAGTGGCAGAGGAAACAGCGAGAGGTTGAAACTTGATTTGTCAACAATTCAGAGAAACCCGGATAAGAATTGTGGGTTGGTGAAGAGGGATAAGATTGCTTTCTTTGACAAAGAGTGTTCGAAAGTGGCAGAACATGTATATCTTGGTGGTGATGCGGTTGCTCGAGATAGGGATATACTTAAACAGAATGGAATAACTCATGTATTGAATTGTGTAGGATTTGTTTGCCCGGAGTATTTCAAAGATGATTTTGTGTACAGAACTTTGTGGTTGCAGGATAGCCCATCTGAGGATATTACTAGTATTCTTTATGATGTTTTTGACTATTTCGAAGATGTTAGGGAACAAAATGGAAGGGTTTTTGTTCATTGTTGCCAGGGAGTATCCCGGTCGACATCCTTGGTGATTGCCTATCTGATGTGGAGAGAAGGGCAGAGTTTTGATGACGCATTTCAATATGTGAAGGCAGCAAGAGGTATTGCCGACCCAAATATGGGTTTTGCTTGTCAGTTATTACAATGTCAAAAGAGGGTCCATGCTTTCCCTCTTAGTCCAAGTTCACTGTTGAGGATGTACAGAATTGCTCCACACTCACCATATGATCCCTTGCATTTGGTCCCCAAAATGTTAAATGATCCTTCACCGTCTGCTCTTGACTCTAGAGGTGCATTTATCATTCATATACCTTCTGCCATATTTGTTTGGCTTGGTAAAAACTGTGAAGCAATCATGGAAAGAGATGCAAGGGGAGCCGTTGTGCAGATTGTTCGGTATGAAAGAGTGCAAGGGCCTATATATGTAATTAAGGAAGGGGAAGAACCAACAAACTTTTGGGATTCTTTTGCAAACCTGTTACCTTTAATGGATAAATCTAACAGTAAAATTAATCTTGGGGAATTAAAAGCTAAGCCTTATCCAGGGGAGAGGAAAGTTGATTCCTATGATGTGGATTTTGAAATTTTTCAGAAGGCTATCACTGGTGGTTTTGTTCCTCCATTTCCTTCATCTGAGAACGAGCATGAAACCCATCTTCCTGTTAGAGAAAGCAGTTGGAGTGTGCTTAGGCGTAAGTTTGCCTCTGGAAATATGAAAGAATCTGTATCAGCTCCTCGAGTATCCCTTTCTAGGGTTTATTCAGACTCGTTGATGATGGTGCATTTTTCTGCCAAATCTTCATCACCTTCAGCGTTTTCTCTGTCGTCGTCATCTTCTTCTCCTATCTATCTTTCACCGGACTCCATCTCTTCTGATTCAAGTTCAAGTTCAAGTTCTAGTTCCAAGTATTTTTCAGAATCCTCTTTAGATTCTCCATCTGCTTCTTCACCTTCAGTTCCAGTTTCTTCCTCACTGTCCAGTTTCTCTAATATGTCTCTTGTCTCATCCAATAGTTCCTCAGAACCTATGCCCAATGTTCCAGAAACTCGTGATACAGTCCCTTTGGAATCAAGTTCTCGCTCATTTTCATTCCCGTCGAAAAAGTTCTCACCTTCTCTTGCAGAACGACGAGGTACTGCAAAATCTCTGACATTGCCTACAATGCCTAGTAAAATCAAAGCAACAAATAGTGCCTCAAGGTTTCTCGCCACTCAAGAAGAAGTTAAGAGGAAAAACAAGACTTCTTACCCTCTTAATGTATCAATTAATATGAAAAATGGCTTAGAGCCTATAGATAGGATTGAAAACGAGCAAACAAGTTCCACCCAGAATTTCAAGAATATTGAAAATAGAATGGAAATAAGGGTAGGTAGTGTGACCTCGTGCCAGCAGGAAACTAAAGCTGCTGGACAATCTACTGGTTCATGGAAAAGCTATCCCAAACTTTTTGAAAAAGGCATGGTGTCCACTGTGTCTAATGGGAAGCAAGATGGTGAGTTTGTCCAACCTATGGTATACTGTTGGCCAGAGTTAGAAAAGATTGCAGCTTTTGACTCAAGTTACCTCAATTCGAAAGCTGCTGTAGTGATTTTCTCTCCAAGTAGGTATTTAGGCAAGAAGGATGACACGATGCTGTATATTTGGGTAGGAAGTTCTTTTGACCATGATTTATCTCAGGTTCATGTAAAGAGGGATAAAGACTTGGTTGATATAGAAAAGATAGACTGGGTTAAAGTTGGTCAATATGTACTTACGGAAATAGATCTGCCAGAAAATACAGAAATTAAGATTGTTAAAGAAGGTGAAGAAACAGAGGAATTTCTTGCACGATTGAGTCTGTTGAAGTCTCGCTGCTAA 2577 41.91 MVGSEEDSGTSGSAAVQLSGSRKMFWRSASWSASRSSLHHPEVNREGGDPNGNLGDGNGPSRIFPAPLTPRSQQHCKARSCLPPLQPLSIARRSLDEWPKAGSDDIGEWPQPPTPSGRGNSERLKLDLSTIQRNPDKNCGLVKRDKIAFFDKECSKVAEHVYLGGDAVARDRDILKQNGITHVLNCVGFVCPEYFKDDFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQNGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRIAPHSPYDPLHLVPKMLNDPSPSALDSRGAFIIHIPSAIFVWLGKNCEAIMERDARGAVVQIVRYERVQGPIYVIKEGEEPTNFWDSFANLLPLMDKSNSKINLGELKAKPYPGERKVDSYDVDFEIFQKAITGGFVPPFPSSENEHETHLPVRESSWSVLRRKFASGNMKESVSAPRVSLSRVYSDSLMMVHFSAKSSSPSAFSLSSSSSSPIYLSPDSISSDSSSSSSSSSKYFSESSLDSPSASSPSVPVSSSLSSFSNMSLVSSNSSSEPMPNVPETRDTVPLESSSRSFSFPSKKFSPSLAERRGTAKSLTLPTMPSKIKATNSASRFLATQEEVKRKNKTSYPLNVSINMKNGLEPIDRIENEQTSSTQNFKNIENRMEIRVGSVTSCQQETKAAGQSTGSWKSYPKLFEKGMVSTVSNGKQDGEFVQPMVYCWPELEKIAAFDSSYLNSKAAVVIFSPSRYLGKKDDTMLYIWVGSSFDHDLSQVHVKRDKDLVDIEKIDWVKVGQYVLTEIDLPENTEIKIVKEGEETEEFLARLSLLKSRC* 859
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4532432 4537992 + CsaV3_5G006730.1 Csa05g00673 529060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00673 858 MobiDBLite consensus disorder prediction 30 77 - -
Csa05g00673 858 PANTHER MKPA PROTEIN 1 848 - -
Csa05g00673 858 SMART VILL_6 305 399 IPR007122 GO:0051015
Csa05g00673 858 Gene3D Severin 304 399 IPR029006 -
Csa05g00673 858 SUPERFAMILY Actin depolymerizing proteins 300 401 - -
Csa05g00673 858 ProSitePatterns Tyrosine specific protein phosphatases active site. 237 247 IPR016130 GO:0016311|GO:0016791
Csa05g00673 858 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 148 294 IPR029021 -
Csa05g00673 858 MobiDBLite consensus disorder prediction 525 556 - -
Csa05g00673 858 MobiDBLite consensus disorder prediction 100 122 - -
Csa05g00673 858 SMART dsp_5 153 292 IPR020422 GO:0006470|GO:0008138
Csa05g00673 858 Coils Coil 671 691 - -
Csa05g00673 858 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 212 273 IPR000387 GO:0016311|GO:0016791
Csa05g00673 858 MobiDBLite consensus disorder prediction 573 623 - -
Csa05g00673 858 Gene3D Protein tyrosine phosphatase superfamily 140 295 IPR029021 -
Csa05g00673 858 Pfam Dual specificity phosphatase, catalytic domain 161 291 IPR000340 GO:0008138|GO:0016311
Csa05g00673 858 MobiDBLite consensus disorder prediction 573 608 - -
Csa05g00673 858 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 1 848 - -
Csa05g00673 858 CDD DSP 154 288 - -
Csa05g00673 858 ProSiteProfiles Dual specificity protein phosphatase domain profile. 153 295 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00011 Csa-Chr1:91324 Csa05g00673 Csa-Chr5:4532432 1.70E-19 dispersed
Csa05g00673 Csa-Chr5:4532432 Csa05g02278 Csa-Chr5:25348207 2.61E-11 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00673 - - csv:101223210 1556.96