Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00706 ATGGCAGATTCTGAGGACATTCAGCCACTCGTATGTGATAATGGAACGGGAATGGTTAAGGCTGGGTTTGCTGGAGATGATGCTCCAAGAGCTGTGTTTCCTAGTATTGTAGGTCGTCCTCGCCACACGGGTGTGATGGTTGGGATGGGTCAGAAAGATGCTTACGTTGGTGATGAGGCTCAATCTAAGCGTGGTATTTTGACTTTGAAATATCCAATTGAGCATGGCATTGTTAGCAATTGGGACGACATGGAAAAGATTTGGCATCACACTTTCTATAATGAGCTTCGTGTTGCCCCCGAGGAGCACCCGGTTCTCCTGACTGAGGCTCCTCTTAACCCAAAGGCCAATCGTGAGAAGATGACACAAATCATGTTTGAAACTTTCAATACTCCAGCCATGTATGTTGCCATTCAAGCTGTTCTGTCCTTGTATGCAAGTGGTCGTACAACTGGTATTGTGTTGGACTCTGGTGATGGTGTCAGTCACACTGTTCCTATATACGAAGGGTATGCCCTCCCACATGCCATCCTTCGTCTCGACCTGGCAGGTCGTGATCTCACAGATAACCTGATGAAAATCCTCACTGAGCGTGGGTACTCTTTCACAACAACTGCTGAGCGTGAAATTGTGAGAGACATGAAAGAAAAGCTGGCATATATCGCTCTTGACTATGAACAAGAGATGGAAACATCCAAGACCAGCTCATCCGTCGAAAAGAGCTACGAATTGCCTGATGGACAGGTGATTACCATTGGTGCAGAGAGATTCAGATGCCCCGAAGTTCTTTTCCAACCCTCCATGATCGGAATGGAAGCAGCAGGCATTCATGAGACTACATATAACTCTATCATGAAGTGTGATGTGGATATCAGGAAGGACCTGTACGGTAACATTGTCCTATCTGGTGGTTCAACCATGTTCCCCGGCATTGCTGATAGAATGAGCAAGGAAATCTCAGCCCTAGCCCCTAGCAGCATGAAGATAAAGGTTGTGGCCCCACCGGAGAGAAAGTACAGTGTCTGGATCGGAGGATCCATCTTGGCATCCCTCAGCACCTTCCAACAGATGTGGATTGCCAAAGCGGAATATGATGAATCTGGACCGTCGATCGTGCACAGGAAATGCTTCTAA 1134 47.27 MADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQEMETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF* 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4780971 4784123 - CsaV3_5G008050.1 Csa05g00706 529093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00706 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Csa05g00706 377 Gene3D - 140 340 - -
Csa05g00706 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Csa05g00706 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Csa05g00706 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Csa05g00706 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Csa05g00706 377 PANTHER ACTIN 1 376 IPR004000 -
Csa05g00706 377 Pfam Actin 5 377 IPR004000 -
Csa05g00706 377 PANTHER ACTIN-97 1 376 - -
Csa05g00706 377 SMART actin_3 7 377 IPR004000 -
Csa05g00706 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Csa05g00706 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Csa05g00706 377 Gene3D - 10 371 - -
Csa05g00706 377 PRINTS Actin signature 28 37 IPR004000 -
Csa05g00706 377 PRINTS Actin signature 51 62 IPR004000 -
Csa05g00706 377 PRINTS Actin signature 63 85 IPR004000 -
Csa05g00706 377 PRINTS Actin signature 117 130 IPR004000 -
Csa05g00706 377 PRINTS Actin signature 142 161 IPR004000 -
Csa05g00706 377 PRINTS Actin signature 238 254 IPR004000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02579 Csa-Chr2:22519230 Csa05g00706 Csa-Chr5:4780971 4.98E-74 dispersed
Csa03g03574 Csa-Chr3:31919491 Csa05g00706 Csa-Chr5:4780971 0 dispersed
Csa05g00706 Csa-Chr5:4780971 Csa06g02804 Csa-Chr6:24455342 0 dispersed
Csa05g00706 Csa-Chr5:4780971 Csa04g01489 Csa-Chr4:14638865 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00706 K10355 - csv:101220611 751.125