Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00706 ATGGCAGATTCTGAGGACATTCAGCCACTCGTATGTGATAATGGAACGGGAATGGTTAAGGCTGGGTTTGCTGGAGATGATGCTCCAAGAGCTGTGTTTCCTAGTATTGTAGGTCGTCCTCGCCACACGGGTGTGATGGTTGGGATGGGTCAGAAAGATGCTTACGTTGGTGATGAGGCTCAATCTAAGCGTGGTATTTTGACTTTGAAATATCCAATTGAGCATGGCATTGTTAGCAATTGGGACGACATGGAAAAGATTTGGCATCACACTTTCTATAATGAGCTTCGTGTTGCCCCCGAGGAGCACCCGGTTCTCCTGACTGAGGCTCCTCTTAACCCAAAGGCCAATCGTGAGAAGATGACACAAATCATGTTTGAAACTTTCAATACTCCAGCCATGTATGTTGCCATTCAAGCTGTTCTGTCCTTGTATGCAAGTGGTCGTACAACTGGTATTGTGTTGGACTCTGGTGATGGTGTCAGTCACACTGTTCCTATATACGAAGGGTATGCCCTCCCACATGCCATCCTTCGTCTCGACCTGGCAGGTCGTGATCTCACAGATAACCTGATGAAAATCCTCACTGAGCGTGGGTACTCTTTCACAACAACTGCTGAGCGTGAAATTGTGAGAGACATGAAAGAAAAGCTGGCATATATCGCTCTTGACTATGAACAAGAGATGGAAACATCCAAGACCAGCTCATCCGTCGAAAAGAGCTACGAATTGCCTGATGGACAGGTGATTACCATTGGTGCAGAGAGATTCAGATGCCCCGAAGTTCTTTTCCAACCCTCCATGATCGGAATGGAAGCAGCAGGCATTCATGAGACTACATATAACTCTATCATGAAGTGTGATGTGGATATCAGGAAGGACCTGTACGGTAACATTGTCCTATCTGGTGGTTCAACCATGTTCCCCGGCATTGCTGATAGAATGAGCAAGGAAATCTCAGCCCTAGCCCCTAGCAGCATGAAGATAAAGGTTGTGGCCCCACCGGAGAGAAAGTACAGTGTCTGGATCGGAGGATCCATCTTGGCATCCCTCAGCACCTTCCAACAGATGTGGATTGCCAAAGCGGAATATGATGAATCTGGACCGTCGATCGTGCACAGGAAATGCTTCTAA 1134 47.27 MADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQEMETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF* 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4780971 4784123 - CsaV3_5G008050.1 Csa05g00706 529093

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00706 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Csa05g00706 377 Gene3D - 140 340 - -
Csa05g00706 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Csa05g00706 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Csa05g00706 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Csa05g00706 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Csa05g00706 377 PANTHER ACTIN 1 376 IPR004000 -
Csa05g00706 377 Pfam Actin 5 377 IPR004000 -
Csa05g00706 377 PANTHER ACTIN-97 1 376 - -
Csa05g00706 377 SMART actin_3 7 377 IPR004000 -
Csa05g00706 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Csa05g00706 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Csa05g00706 377 Gene3D - 10 371 - -
Csa05g00706 377 PRINTS Actin signature 28 37 IPR004000 -
Csa05g00706 377 PRINTS Actin signature 51 62 IPR004000 -
Csa05g00706 377 PRINTS Actin signature 63 85 IPR004000 -
Csa05g00706 377 PRINTS Actin signature 117 130 IPR004000 -
Csa05g00706 377 PRINTS Actin signature 142 161 IPR004000 -
Csa05g00706 377 PRINTS Actin signature 238 254 IPR004000 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00706 K10355 ACTF; actin, other eukaryote - csv:101220611 751.125
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02579 Csa-Chr2:22519230 Csa05g00706 Csa-Chr5:4780971 4.98E-74 dispersed
Csa03g03574 Csa-Chr3:31919491 Csa05g00706 Csa-Chr5:4780971 0 dispersed
Csa05g00706 Csa-Chr5:4780971 Csa06g02804 Csa-Chr6:24455342 0 dispersed
Csa05g00706 Csa-Chr5:4780971 Csa04g01489 Csa-Chr4:14638865 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g295 Blo04g00108 . . . . . . . Cmo04g00222 Cmo04g01263 Cma04g01189 Cma04g00220 Car04g01093 . . . Cpe01g00187 . . . . . . . Cla07g00303 Cam07g0320 Cec07g0364 Cco07g0325 Clacu07g0312 Cmu07g0369 Cre07g0679 . . . . Lsi03g00412 . Chy10g00547 Cme10g00888 . . . Bda15g00357 . . . . . . Cmo15g00397 . Cma15g00386 . Car15g00367 Cpe01g01096 . . . . . . . . . . . . . . . Lsi04g00880 Csa05g00706 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa04g01489 . 1 378 Cytoskeleton Gene Families AT2G37620 97.1 1.9e-215 745.0
Csa03g03574 . 1 378 Cytoskeleton Gene Families AT2G37620 96.8 5.5e-215 743.4
Csa05g00706 . 1 378 Cytoskeleton Gene Families AT2G37620 96.0 1.3e-213 738.8
Csa02g01593 . 1 378 Cytoskeleton Gene Families AT2G37620 95.5 1.8e-213 738.4
Csa06g02804 . 1 378 Cytoskeleton Gene Families AT2G37620 95.5 1.8e-213 738.4
Csa07g00510 . 1 378 Cytoskeleton Gene Families AT2G37620 94.4 1.1e-212 735.7
Csa05g01846 . 1 316 Cytoskeleton Gene Families AT2G37620 94.3 5.7e-172 600.5
Csa03g03574 . 1 378 Cytoskeleton Gene Families AT5G59370 97.1 4.6e-214 740.3
Csa05g00706 . 1 378 Cytoskeleton Gene Families AT5G59370 96.6 1.0e-213 739.2
Csa04g01489 . 1 378 Cytoskeleton Gene Families AT5G59370 96.8 1.8e-213 738.4
Csa02g01593 . 1 378 Cytoskeleton Gene Families AT5G59370 94.4 2.4e-210 728.0
Csa06g02804 . 1 378 Cytoskeleton Gene Families AT5G59370 94.4 2.4e-210 728.0
Csa07g00510 . 1 378 Cytoskeleton Gene Families AT5G59370 93.9 4.1e-210 727.2
Csa05g01846 . 1 316 Cytoskeleton Gene Families AT5G59370 95.6 1.0e-173 606.3
Csa03g03574 . 1 378 Cytoskeleton Gene Families AT3G46520 97.4 2.1e-214 741.5
Csa05g00706 . 1 378 Cytoskeleton Gene Families AT3G46520 96.8 4.6e-214 740.3
Csa04g01489 . 1 378 Cytoskeleton Gene Families AT3G46520 97.1 7.9e-214 739.6
Csa02g01593 . 1 378 Cytoskeleton Gene Families AT3G46520 94.7 1.1e-210 729.2
Csa06g02804 . 1 378 Cytoskeleton Gene Families AT3G46520 94.7 1.1e-210 729.2
Csa07g00510 . 1 378 Cytoskeleton Gene Families AT3G46520 94.2 1.8e-210 728.4
Csa05g01846 . 1 316 Cytoskeleton Gene Families AT3G46520 95.9 4.7e-174 607.4
Csa03g03574 . 1 378 Cytoskeleton Gene Families AT3G12110 97.1 2.5e-215 744.6
Csa05g00706 . 1 378 Cytoskeleton Gene Families AT3G12110 97.1 3.2e-215 744.2
Csa04g01489 . 1 378 Cytoskeleton Gene Families AT3G12110 96.8 9.3e-215 742.7
Csa02g01593 . 1 378 Cytoskeleton Gene Families AT3G12110 95.5 6.7e-213 736.5
Csa06g02804 . 1 378 Cytoskeleton Gene Families AT3G12110 95.5 6.7e-213 736.5
Csa07g00510 . 1 378 Cytoskeleton Gene Families AT3G12110 95.2 8.7e-213 736.1
Csa05g01846 . 1 316 Cytoskeleton Gene Families AT3G12110 94.6 8.8e-173 603.2
Csa02g01593 . 1 378 Cytoskeleton Gene Families AT3G18780 93.1 3.4e-209 724.2
Csa06g02804 . 1 378 Cytoskeleton Gene Families AT3G18780 93.1 3.4e-209 724.2
Csa03g03574 . 1 378 Cytoskeleton Gene Families AT3G18780 92.3 1.3e-208 722.2
Csa05g00706 . 1 378 Cytoskeleton Gene Families AT3G18780 92.3 1.7e-208 721.8
Csa04g01489 . 1 378 Cytoskeleton Gene Families AT3G18780 92.3 2.9e-208 721.1
Csa07g00510 . 1 378 Cytoskeleton Gene Families AT3G18780 92.3 3.8e-208 720.7
Csa05g01846 . 1 322 Cytoskeleton Gene Families AT3G18780 91.0 3.7e-171 597.8
Csa02g01593 . 1 378 Cytoskeleton Gene Families AT1G49240 93.4 1.2e-209 725.7
Csa06g02804 . 1 378 Cytoskeleton Gene Families AT1G49240 93.4 1.2e-209 725.7
Csa03g03574 . 1 378 Cytoskeleton Gene Families AT1G49240 92.6 4.5e-209 723.8
Csa05g00706 . 1 378 Cytoskeleton Gene Families AT1G49240 92.6 5.9e-209 723.4
Csa04g01489 . 1 378 Cytoskeleton Gene Families AT1G49240 92.6 1.0e-208 722.6
Csa07g00510 . 1 378 Cytoskeleton Gene Families AT1G49240 92.6 1.3e-208 722.2
Csa05g01846 . 1 322 Cytoskeleton Gene Families AT1G49240 91.0 3.7e-171 597.8
Csa02g01593 . 1 378 Cytoskeleton Gene Families AT5G09810 98.4 5.9e-217 750.0
Csa06g02804 . 1 378 Cytoskeleton Gene Families AT5G09810 98.4 5.9e-217 750.0
Csa03g03574 . 1 378 Cytoskeleton Gene Families AT5G09810 96.6 4.6e-214 740.3
Csa04g01489 . 1 378 Cytoskeleton Gene Families AT5G09810 96.6 4.6e-214 740.3
Csa07g00510 . 1 378 Cytoskeleton Gene Families AT5G09810 95.8 1.3e-213 738.8
Csa05g00706 . 1 378 Cytoskeleton Gene Families AT5G09810 96.0 2.3e-213 738.0
Csa05g01846 . 1 316 Cytoskeleton Gene Families AT5G09810 94.3 7.5e-172 600.1
Csa02g00079 . 1 134 Cytoskeleton Gene Families AT2G19760 76.1 1.2e-55 212.6
Csa02g00080 . 1 145 Cytoskeleton Gene Families AT2G19760 69.7 7.6e-55 209.9
Csa03g02348 . 1 132 Cytoskeleton Gene Families AT2G19760 73.5 2.9e-54 208.0
Csa02g00080 . 1 145 Cytoskeleton Gene Families AT4G29350 71.0 4.5e-55 210.7
Csa03g02348 . 1 132 Cytoskeleton Gene Families AT4G29350 75.0 4.5e-55 210.7
Csa02g00079 . 1 134 Cytoskeleton Gene Families AT4G29350 74.6 2.2e-54 208.4
Csa02g00080 . 1 100 Cytoskeleton Gene Families AT5G56600 70.0 7.0e-38 153.3
Csa02g00079 . 1 134 Cytoskeleton Gene Families AT4G29340 85.2 1.4e-64 242.3
Csa03g02348 . 1 132 Cytoskeleton Gene Families AT4G29340 68.9 8.1e-52 199.9
Csa02g00080 . 1 145 Cytoskeleton Gene Families AT4G29340 64.9 2.3e-51 198.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00706 Csa_Chr05 FPKM 7.179297 7.318339 3.684134 3.488976 6.030327 6.120192 5.940896 2.669685 2.922863 2.940588