Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00707 ATGGTTTTTCCTCCTCTCCCTTCTTATTTGGATCCTCCTAACTGGCAACCGTTGACGAATCATCAAACGGGAGGAAATGACACTGCAGAGGATTCTGGTCAAGTTTTACTGCCTCCGCCACCTGGGGGTGGGGGAGGTGGTGACGGTGGTGGTGGTACCGGGTCGATTAGGCCAGTTTCGATGACTGATCGGGCTCGGTTGGCAAAGATTCCGCAGCCAGAGGCCGGCTTGAAATGCCCTAGATGTGAATCTACAAACACCAAATTTTGTTACTTCAATAACTATAATCTTTCTCAGCCTCGTCACTTTTGTAAGACTTGTCGTCGGTATTGGACACGTGGTGGTGCACTGAGGAATGTTCCGGTTGGTGGTGGCTGCCGTAGGAACAAGAGAACCAAATCTCGGAATCGGTCGAAGTCTCCAGCAGCCAGTGAACGACAATTATTAGGTGGATCAACTAATTCCACTGCTGCAGTTTCACTTTCAACACAACCCCATTTGCCGTTTTTGTCTTCTTTACATAATTTCTCTACTTACGGCCTCAATTTGGGGATAATTCCGCCTCAAGCTCCTCCAACAAGCGGTGGCTCTGCTGCCGGAGGAGTAGATGTTCATGAATTTCAAGGTGACCATTGGAGATTACAACCACCACAACAATTCCCTCTCTTGGCTAATGATCAACAACCTAATTTGCTTTACACTTTCGAACCACCCGAAGGCGCCATGGCTCGGTATAATCTTGGTGGGTTCTCGAGATTAGGGATTGAAAACGACATTGGGATGACAATGGAGTCTGGGGCGGTGAAGGTGGAGGAGAGTAAAGGAATGAACTTGGGGAAGAATTTTCAGTTTTGGGTTGGTGGCGGTGGCGGAAACGATGTAAATGCATGGAGTGGCGGCGGCAGTGGTGGTGCCGATCTTCATGGCTTCTCTTCAGCCTCCGCCAGCCACTTATTGAGACAGTCTAGAGATCGTATTCAAATCTTCTGTTTCAAATGTCGTGTTAGAATTAAAAAAAAGGGAAGAAGGAATAATAATATTAAGTCCTTAAAAGGAGGTGTGTGTTATCTATTTAGATATTGTATACAGAGATATTATTGTATTGTACAGATCATTATGGGGGGACTGTAA 1131 46.33 MVFPPLPSYLDPPNWQPLTNHQTGGNDTAEDSGQVLLPPPPGGGGGGDGGGGTGSIRPVSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTKSRNRSKSPAASERQLLGGSTNSTAAVSLSTQPHLPFLSSLHNFSTYGLNLGIIPPQAPPTSGGSAAGGVDVHEFQGDHWRLQPPQQFPLLANDQQPNLLYTFEPPEGAMARYNLGGFSRLGIENDIGMTMESGAVKVEESKGMNLGKNFQFWVGGGGGNDVNAWSGGGSGGADLHGFSSASASHLLRQSRDRIQIFCFKCRVRIKKKGRRNNNIKSLKGGVCYLFRYCIQRYYCIVQIIMGGL* 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4789391 4791695 - CsaV3_5G008060.1 Csa05g00707 529094

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00707 376 MobiDBLite consensus disorder prediction 121 151 - -
Csa05g00707 376 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 7 297 IPR045174 GO:0003700|GO:0006355
Csa05g00707 376 MobiDBLite consensus disorder prediction 1 58 - -
Csa05g00707 376 Pfam Dof domain, zinc finger 77 131 IPR003851 GO:0003677|GO:0006355
Csa05g00707 376 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 7 297 - -
Csa05g00707 376 ProSitePatterns Zinc finger Dof-type signature. 79 115 IPR003851 GO:0003677|GO:0006355
Csa05g00707 376 ProSiteProfiles Zinc finger Dof-type profile. 77 131 IPR003851 GO:0003677|GO:0006355
Csa05g00707 376 MobiDBLite consensus disorder prediction 13 30 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00707 - - - csv:101220381 625.935
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02399 Csa-Chr1:21290901 Csa05g00707 Csa-Chr5:4789391 1.68E-56 dispersed
Csa05g00707 Csa-Chr5:4789391 Csa06g01656 Csa-Chr6:14567183 3.97E-34 dispersed
Csa03g00696 Csa-Chr3:6249523 Csa05g00707 Csa-Chr5:4789391 2.50E-34 transposed
Csa03g03190 Csa-Chr3:29464183 Csa05g00707 Csa-Chr5:4789391 2.95E-59 wgd
Csa04g01478 Csa-Chr4:14585987 Csa05g00707 Csa-Chr5:4789391 5.65E-49 wgd
Csa05g00707 Csa-Chr5:4789391 Csa05g01834 Csa-Chr5:21688794 1.96E-51 wgd
Csa05g00707 Csa-Chr5:4789391 Csa06g01499 Csa-Chr6:12669120 6.42E-42 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g300 . . . . . . . . Cmo04g00221 Cmo04g01262 Cma04g01188 Cma04g00219 Car04g01092 . . . Cpe01g00186 . . . . . . . Cla07g00304 Cam07g0322 Cec07g0366 Cco07g0327 Clacu07g0315 Cmu07g0371 Cre07g0681 . . . . . . Chy10g00546 Cme10g00889 . . . . . . . . . . . . . . . Cpe01g01095 . . . . . . . . . . . . . . . Lsi04g00882 Csa05g00707 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa01g02327 CCT 22 149 C2C2-Dof Transcription Factor Family AT1G29160 66.7 1.2e-42 169.9
Csa06g03703 CCT 6 164 C2C2-Dof Transcription Factor Family AT1G29160 51.4 2.1e-39 159.1
Csa05g00179 . 1 96 C2C2-Dof Transcription Factor Family AT1G64620 76.7 5.2e-42 168.7
Csa01g02327 CCT 9 149 C2C2-Dof Transcription Factor Family AT2G34140 55.8 3.1e-40 161.8
Csa06g03703 CCT 6 172 C2C2-Dof Transcription Factor Family AT2G34140 50.3 7.6e-39 157.1
Csa03g03190 CCT,ECH 1 129 C2C2-Dof Transcription Factor Family AT2G37590 66.7 9.2e-41 164.5
Csa05g00707 . 1 129 C2C2-Dof Transcription Factor Family AT2G37590 63.1 1.1e-38 157.5
Csa05g01834 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 65.5 2.8e-37 152.9
Csa01g02399 CCT,ECH 65 139 C2C2-Dof Transcription Factor Family AT2G37590 89.3 4.7e-37 152.1
Csa05g00179 . 1 94 C2C2-Dof Transcription Factor Family AT4G24060 79.8 7.1e-44 174.9
Csa01g02399 CCT,ECH 1 139 C2C2-Dof Transcription Factor Family AT5G02460 57.1 9.4e-40 161.4
Csa04g01478 CCT,ECH 42 122 C2C2-Dof Transcription Factor Family AT5G02460 82.7 1.2e-37 154.5
Csa03g03190 CCT,ECH 46 132 C2C2-Dof Transcription Factor Family AT3G55370 78.2 2.4e-37 153.3
Csa04g01478 CCT,ECH 43 176 C2C2-Dof Transcription Factor Family AT3G55370 57.9 5.3e-37 152.1
Csa01g00332 CCT 28 339 C2C2-Dof Transcription Factor Family AT5G60850 51.4 5.7e-45 178.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007574 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31705 PF02701 zf-Dof 5.60E-32 No_clan Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00707 Csa_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0