Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00707 ATGGTTTTTCCTCCTCTCCCTTCTTATTTGGATCCTCCTAACTGGCAACCGTTGACGAATCATCAAACGGGAGGAAATGACACTGCAGAGGATTCTGGTCAAGTTTTACTGCCTCCGCCACCTGGGGGTGGGGGAGGTGGTGACGGTGGTGGTGGTACCGGGTCGATTAGGCCAGTTTCGATGACTGATCGGGCTCGGTTGGCAAAGATTCCGCAGCCAGAGGCCGGCTTGAAATGCCCTAGATGTGAATCTACAAACACCAAATTTTGTTACTTCAATAACTATAATCTTTCTCAGCCTCGTCACTTTTGTAAGACTTGTCGTCGGTATTGGACACGTGGTGGTGCACTGAGGAATGTTCCGGTTGGTGGTGGCTGCCGTAGGAACAAGAGAACCAAATCTCGGAATCGGTCGAAGTCTCCAGCAGCCAGTGAACGACAATTATTAGGTGGATCAACTAATTCCACTGCTGCAGTTTCACTTTCAACACAACCCCATTTGCCGTTTTTGTCTTCTTTACATAATTTCTCTACTTACGGCCTCAATTTGGGGATAATTCCGCCTCAAGCTCCTCCAACAAGCGGTGGCTCTGCTGCCGGAGGAGTAGATGTTCATGAATTTCAAGGTGACCATTGGAGATTACAACCACCACAACAATTCCCTCTCTTGGCTAATGATCAACAACCTAATTTGCTTTACACTTTCGAACCACCCGAAGGCGCCATGGCTCGGTATAATCTTGGTGGGTTCTCGAGATTAGGGATTGAAAACGACATTGGGATGACAATGGAGTCTGGGGCGGTGAAGGTGGAGGAGAGTAAAGGAATGAACTTGGGGAAGAATTTTCAGTTTTGGGTTGGTGGCGGTGGCGGAAACGATGTAAATGCATGGAGTGGCGGCGGCAGTGGTGGTGCCGATCTTCATGGCTTCTCTTCAGCCTCCGCCAGCCACTTATTGAGACAGTCTAGAGATCGTATTCAAATCTTCTGTTTCAAATGTCGTGTTAGAATTAAAAAAAAGGGAAGAAGGAATAATAATATTAAGTCCTTAAAAGGAGGTGTGTGTTATCTATTTAGATATTGTATACAGAGATATTATTGTATTGTACAGATCATTATGGGGGGACTGTAA 1131 46.33 MVFPPLPSYLDPPNWQPLTNHQTGGNDTAEDSGQVLLPPPPGGGGGGDGGGGTGSIRPVSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTKSRNRSKSPAASERQLLGGSTNSTAAVSLSTQPHLPFLSSLHNFSTYGLNLGIIPPQAPPTSGGSAAGGVDVHEFQGDHWRLQPPQQFPLLANDQQPNLLYTFEPPEGAMARYNLGGFSRLGIENDIGMTMESGAVKVEESKGMNLGKNFQFWVGGGGGNDVNAWSGGGSGGADLHGFSSASASHLLRQSRDRIQIFCFKCRVRIKKKGRRNNNIKSLKGGVCYLFRYCIQRYYCIVQIIMGGL* 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4789391 4791695 - CsaV3_5G008060.1 Csa05g00707 529094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00707 376 MobiDBLite consensus disorder prediction 121 151 - -
Csa05g00707 376 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 7 297 IPR045174 GO:0003700|GO:0006355
Csa05g00707 376 MobiDBLite consensus disorder prediction 1 58 - -
Csa05g00707 376 Pfam Dof domain, zinc finger 77 131 IPR003851 GO:0003677|GO:0006355
Csa05g00707 376 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 7 297 - -
Csa05g00707 376 ProSitePatterns Zinc finger Dof-type signature. 79 115 IPR003851 GO:0003677|GO:0006355
Csa05g00707 376 ProSiteProfiles Zinc finger Dof-type profile. 77 131 IPR003851 GO:0003677|GO:0006355
Csa05g00707 376 MobiDBLite consensus disorder prediction 13 30 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02399 Csa-Chr1:21290901 Csa05g00707 Csa-Chr5:4789391 1.68E-56 dispersed
Csa05g00707 Csa-Chr5:4789391 Csa06g01656 Csa-Chr6:14567183 3.97E-34 dispersed
Csa03g00696 Csa-Chr3:6249523 Csa05g00707 Csa-Chr5:4789391 2.50E-34 transposed
Csa03g03190 Csa-Chr3:29464183 Csa05g00707 Csa-Chr5:4789391 2.95E-59 wgd
Csa04g01478 Csa-Chr4:14585987 Csa05g00707 Csa-Chr5:4789391 5.65E-49 wgd
Csa05g00707 Csa-Chr5:4789391 Csa05g01834 Csa-Chr5:21688794 1.96E-51 wgd
Csa05g00707 Csa-Chr5:4789391 Csa06g01499 Csa-Chr6:12669120 6.42E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31705 PF02701 zf-Dof 5.60E-32 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00707 - - csv:101220381 625.935