Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00717 ATGCCTTCTCCTGCCCTTTCTCTTACACTTCTCCCCATTCTCCTCTCTCTTCTCACCGTCCATGCTCGGATTCCCGGAGTTTACTCCGGTGGCCAGTGGCAGAGTGCTCATGCTACTTTTTATGGCGGCAGTGACGCCTCCGGAACCATGGGAGGAGCTTGCGGTTACGGAAACTTATACAGCCAAGGCTACGGCGTAAACACGGCGGCGCTAAGCACTGCTCTGTTCAACAACGGTTTGAGCTGCGGAGCCTGCTTCGAGCTTAAGTGCGCTAACGATCCGCAGTGGTGCCATTCCGGGAGTCCGTCGATTTTCATAACAGCCACAAACTTTTGCCCGCCTAACTACGCTCTTCCAAGTGACAATGGCGGCTGGTGCAACCCTCCCCGTCCTCACTTCGACCTTGCCATGCCAATGTTTCTCAAGATCGCCGAGTACAGAGCCGGAATCGTTCCCGTCTCTTACCGCAGGGTACCATGCCGGAAACAAGGAGGAATAAGATTCACAATCAACGGCTTCCGATACTTCAACTTGATACTAATAACAAACGTGGCAGGAGCAGGGGACATCGTGAAAGCAAGCGTAAAAGGCAGCAAAACAGAGTGGATGAGCATGAGCAGAAATTGGGGTCAAAACTGGCAATCAAATGCCATTTTGGTCGGTCAGTCACTTTCTTTTAGGGTAACATCCAGTGACCGTCGCACTTCCACTTCTTGGAACATCGTCCCTTCCAATTGGCAATTTGGCCAAACTTTCACCGGCAAGAACTTCAGAGTCTAA 780 51.67 MPSPALSLTLLPILLSLLTVHARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCANDPQWCHSGSPSIFITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGIRFTINGFRYFNLILITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAILVGQSLSFRVTSSDRRTSTSWNIVPSNWQFGQTFTGKNFRV* 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4890874 4896688 - CsaV3_5G008160.1 Csa05g00717 529104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00717 259 SMART dpbb_1 68 155 IPR007112 -
Csa05g00717 259 SUPERFAMILY PHL pollen allergen 162 254 IPR036749 -
Csa05g00717 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Csa05g00717 259 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Csa05g00717 259 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Csa05g00717 259 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Csa05g00717 259 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Csa05g00717 259 PRINTS Expansin signature 164 176 IPR002963 GO:0009664
Csa05g00717 259 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Csa05g00717 259 PRINTS Expansin signature 211 232 IPR002963 GO:0009664
Csa05g00717 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664
Csa05g00717 259 Pfam Expansin C-terminal domain 166 243 IPR007117 -
Csa05g00717 259 Gene3D - 165 257 IPR036749 -
Csa05g00717 259 SUPERFAMILY Barwin-like endoglucanases 32 183 IPR036908 -
Csa05g00717 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Csa05g00717 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Csa05g00717 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Csa05g00717 259 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Csa05g00717 259 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Csa05g00717 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576
Csa05g00717 259 PANTHER EXPANSIN-A4 10 258 - -
Csa05g00717 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
Csa05g00717 259 Pfam Lytic transglycolase 68 155 IPR009009 -
Csa05g00717 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 165 IPR007112 -
Csa05g00717 259 Gene3D - 21 161 IPR036908 -
Csa05g00717 259 PANTHER EXPANSIN-A15 10 258 IPR002963 GO:0009664
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00717 Csa-Chr5:4890874 Csa05g01856 Csa-Chr5:21845772 3.33E-151 dispersed
Csa01g02423 Csa-Chr1:21492231 Csa05g00717 Csa-Chr5:4890874 3.66E-164 wgd
Csa04g01497 Csa-Chr4:14702397 Csa05g00717 Csa-Chr5:4890874 1.54E-169 wgd
Csa05g00717 Csa-Chr5:4890874 Csa06g01479 Csa-Chr6:12545225 1.52E-169 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00717 - - csv:101218950 518.85