Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00729 ATGACAGGCCTTAACTCTTCTAATTCTTCTACTTCTTGTGGTGCTTGCAAGTTTCTTAGAAGAAAATGTAGTGATCAATGTGTTTTTGCTCCTTTCTTTAGCTATGATGAAGCTACTTCTCATTTTGCAGCTGTTCATAAAGTGTTTGGTGCTAGTAATGTCTCTAAACTTCTCTTACACCTCCCCACCCATATCCGAAGCCATGCTGCCATTACCGTTGCCTACGAAGCTCTTGAACGCATGCGTGATCCTACTTATGGTTGTGTTGCGCATATCTTTGCATTGCAACAAGAGGTTGCTAGCTTGCAGGAGGAGATAGAAATTCTGGGGAGCCAAATTGCGAATTTTGCCACAACCGGTGGGAGCATTGCAGCGGTCGATAATCCATTTATAGATCAGGTTCAAGTGCCACAGCAGATGGATGGTTTCGGGATGATGAACACAAATTATTATCAAAATGAGCTAGTTTCTGAGTTGCCCTACCAAAGTTTTGATAATGTCCAAAACGATAATACTACTGCTCAAATGATATCTCCATTGTTTTGTTTAGGGGAAGAAGATGGGGTTTTTGAGTTTTCCAACTCAAATAATGTTGTTGAGAGTTCAGCCTTTGATGTTTCAGTTGAGGAGAATTGTATTGGTTACCCATGGATAGTTGGATGA 663 40.87 MTGLNSSNSSTSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPTHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVASLQEEIEILGSQIANFATTGGSIAAVDNPFIDQVQVPQQMDGFGMMNTNYYQNELVSELPYQSFDNVQNDNTTAQMISPLFCLGEEDGVFEFSNSNNVVESSAFDVSVEENCIGYPWIVG* 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5004155 5005069 + CsaV3_5G008280.1 Csa05g00729 529116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00729 220 Coils Coil 92 112 - -
Csa05g00729 220 ProSiteProfiles LOB domain profile. 11 113 IPR004883 -
Csa05g00729 220 PANTHER LOB DOMAIN-CONTAINING PROTEIN 33 1 210 - -
Csa05g00729 220 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 210 - -
Csa05g00729 220 Pfam Lateral organ boundaries (LOB) domain 12 108 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00729 Csa-Chr5:5004155 Csa06g00613 Csa-Chr6:5177900 7.22E-42 dispersed
Csa05g00729 Csa-Chr5:5004155 Csa03g00963 Csa-Chr3:7849883 3.27E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31706 PF03195 LOB 3.10E-33 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00729 K13945 - csv:101204875 440.269