Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa05g00730 | ATGGCGAATCGATGGTGGGCTGAAAACATACCCACCACCACAGATAGCAGCACCAGCAACCCTTATTCGACTCCATTAAAGCAAAGCTTAGAAGTTGCTGATGAAGAGAACAACTCCGGTAGTCATGAAAGAGCCGAACCAGGCACTAGTTCAAGCACGCGCCGCCCTCGTGGCCGGCCGCCGGGATCTAAGAACAAGCCGAAGCCACCGGTGGTGGTCACTAAGGAGAGCCCCGATGCCCTTCGGAGCCACGTTTTGGAAATTGGTAGCGGCAGCGACATCGTTGAAAGCATCTCGAACTTTGCCCAGCGCCGGCAGCGAGGAGTTTCGGTTCTCGGTGGAAATGGGGTTGTTGCCAATGTTACTCTCCGGCATCCGGGTGCCTCTGGCGGTGTTATTACGCTACAGGGTCGATTTGATATATTGTCGCTCTCTGGTGCTTTTTTGCCTGCCCCAGCTCCACCGGGTGCTACTGGATTAACTGTCTACTTAGCTGGCGGGCAGGGGCAGGTGGTTGGTGGCATTGTCGTCGGTGCACTCGTGGCAACCGGTCCAGTTATTGTAATCGCTGCCACTTTCACCAATGCGACATTCGAGCGCCTACCGCTAGAGGACGAGGAGGTTGCCGCCGGAGACAAGTCTGGAACTAGCCAGAACAATTCAACATCTCAGAGCATGGGGGAGCAACAGCAACAGCAACAGCAGCCATCTATGGGAGTTTACAATATGACCCCAAATTTGGTGACAAATGGTCAGGTTTCTTCACATGAGATGATTTGGAGTCTTCCGAGAGCCCCACCTCCATTTTAA | 810 | 53.83 | MANRWWAENIPTTTDSSTSNPYSTPLKQSLEVADEENNSGSHERAEPGTSSSTRRPRGRPPGSKNKPKPPVVVTKESPDALRSHVLEIGSGSDIVESISNFAQRRQRGVSVLGGNGVVANVTLRHPGASGGVITLQGRFDILSLSGAFLPAPAPPGATGLTVYLAGGQGQVVGGIVVGALVATGPVIVIAATFTNATFERLPLEDEEVAAGDKSGTSQNNSTSQSMGEQQQQQQQPSMGVYNMTPNLVTNGQVSSHEMIWSLPRAPPPF* | 270 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 5009609 | 5010418 | - | CsaV3_5G008290.1 | Csa05g00730 | 529117 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa05g00730 | 269 | ProSiteProfiles | PPC domain profile profile. | 78 | 216 | IPR005175 | - | |
Csa05g00730 | 269 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
Csa05g00730 | 269 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 79 | 208 | - | - | |
Csa05g00730 | 269 | MobiDBLite | consensus disorder prediction | 212 | 247 | - | - | |
Csa05g00730 | 269 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 16 | 267 | IPR014476 | GO:0003680 | |
Csa05g00730 | 269 | MobiDBLite | consensus disorder prediction | 1 | 78 | - | - | |
Csa05g00730 | 269 | PIRSF | ESCAROLA | 7 | 267 | IPR014476 | GO:0003680 | |
Csa05g00730 | 269 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 82 | 195 | IPR005175 | - | |
Csa05g00730 | 269 | Gene3D | - | 81 | 210 | - | - | |
Csa05g00730 | 269 | MobiDBLite | consensus disorder prediction | 207 | 247 | - | - | |
Csa05g00730 | 269 | MobiDBLite | consensus disorder prediction | 43 | 58 | - | - | |
Csa05g00730 | 269 | CDD | DUF296 | 82 | 165 | IPR005175 | - | |
Csa05g00730 | 269 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 16 | 267 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g01238 | Csa-Chr3:9482124 | Csa05g00730 | Csa-Chr5:5009609 | 3.51E-73 | dispersed | |
Csa05g00730 | Csa-Chr5:5009609 | Csa06g00649 | Csa-Chr6:5397986 | 1.23E-66 | dispersed | |
Csa05g00730 | Csa-Chr5:5009609 | Csa06g00131 | Csa-Chr6:858735 | 3.21E-63 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa05g00730 | - | - | csv:101217530 | 422.55 |