Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00730 ATGGCGAATCGATGGTGGGCTGAAAACATACCCACCACCACAGATAGCAGCACCAGCAACCCTTATTCGACTCCATTAAAGCAAAGCTTAGAAGTTGCTGATGAAGAGAACAACTCCGGTAGTCATGAAAGAGCCGAACCAGGCACTAGTTCAAGCACGCGCCGCCCTCGTGGCCGGCCGCCGGGATCTAAGAACAAGCCGAAGCCACCGGTGGTGGTCACTAAGGAGAGCCCCGATGCCCTTCGGAGCCACGTTTTGGAAATTGGTAGCGGCAGCGACATCGTTGAAAGCATCTCGAACTTTGCCCAGCGCCGGCAGCGAGGAGTTTCGGTTCTCGGTGGAAATGGGGTTGTTGCCAATGTTACTCTCCGGCATCCGGGTGCCTCTGGCGGTGTTATTACGCTACAGGGTCGATTTGATATATTGTCGCTCTCTGGTGCTTTTTTGCCTGCCCCAGCTCCACCGGGTGCTACTGGATTAACTGTCTACTTAGCTGGCGGGCAGGGGCAGGTGGTTGGTGGCATTGTCGTCGGTGCACTCGTGGCAACCGGTCCAGTTATTGTAATCGCTGCCACTTTCACCAATGCGACATTCGAGCGCCTACCGCTAGAGGACGAGGAGGTTGCCGCCGGAGACAAGTCTGGAACTAGCCAGAACAATTCAACATCTCAGAGCATGGGGGAGCAACAGCAACAGCAACAGCAGCCATCTATGGGAGTTTACAATATGACCCCAAATTTGGTGACAAATGGTCAGGTTTCTTCACATGAGATGATTTGGAGTCTTCCGAGAGCCCCACCTCCATTTTAA 810 53.83 MANRWWAENIPTTTDSSTSNPYSTPLKQSLEVADEENNSGSHERAEPGTSSSTRRPRGRPPGSKNKPKPPVVVTKESPDALRSHVLEIGSGSDIVESISNFAQRRQRGVSVLGGNGVVANVTLRHPGASGGVITLQGRFDILSLSGAFLPAPAPPGATGLTVYLAGGQGQVVGGIVVGALVATGPVIVIAATFTNATFERLPLEDEEVAAGDKSGTSQNNSTSQSMGEQQQQQQQPSMGVYNMTPNLVTNGQVSSHEMIWSLPRAPPPF* 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5009609 5010418 - CsaV3_5G008290.1 Csa05g00730 529117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00730 269 ProSiteProfiles PPC domain profile profile. 78 216 IPR005175 -
Csa05g00730 269 MobiDBLite consensus disorder prediction 1 35 - -
Csa05g00730 269 SUPERFAMILY AF0104/ALDC/Ptd012-like 79 208 - -
Csa05g00730 269 MobiDBLite consensus disorder prediction 212 247 - -
Csa05g00730 269 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 16 267 IPR014476 GO:0003680
Csa05g00730 269 MobiDBLite consensus disorder prediction 1 78 - -
Csa05g00730 269 PIRSF ESCAROLA 7 267 IPR014476 GO:0003680
Csa05g00730 269 Pfam Plants and Prokaryotes Conserved (PCC) domain 82 195 IPR005175 -
Csa05g00730 269 Gene3D - 81 210 - -
Csa05g00730 269 MobiDBLite consensus disorder prediction 207 247 - -
Csa05g00730 269 MobiDBLite consensus disorder prediction 43 58 - -
Csa05g00730 269 CDD DUF296 82 165 IPR005175 -
Csa05g00730 269 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 16 267 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01238 Csa-Chr3:9482124 Csa05g00730 Csa-Chr5:5009609 3.51E-73 dispersed
Csa05g00730 Csa-Chr5:5009609 Csa06g00649 Csa-Chr6:5397986 1.23E-66 dispersed
Csa05g00730 Csa-Chr5:5009609 Csa06g00131 Csa-Chr6:858735 3.21E-63 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00730 - - csv:101217530 422.55