Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00796 ATGGAGGCTAAGGAAGAAGATGTTCGATTGGGAGCTAACAGGTTCACCGAGAGGCAGCCCATTGGGACGGCGGCCCAGAGCCAAGACGATGCCAAGGACTACAAGGAGCCACCACCGGCTCCTCTCTTCGAGCCGGAGGAGCTCACTTCATGGTCTTTTTACAGAGCTGGAATCGCCGAGTTTTTCGCTACTTTTCTCTTCCTTTACATCACCGTTTTGACCGTCATGGGTGTCACCCGGTCCAAGGAAGCGGATGGTAATACCTGTAACACCGTCGGGATTCAGGGCATTGCTTGGGCTTTCGGTGGTATGATTTTTGCTCTCGTTTACTGTACTGCTGGAATCTCTGGTGGCCACATTAACCCGGCGGTCACTTTTGGGTTGTTTCTAGCGAGGAAATTGTCGTTGACTAGGGCGATTTTCTACATTGTGATGCAATGCCTTGGTGCCATCTGCGGCGCGGGAGTGGTGAAGGGGTTCCAACCCAAGCCCTATGAAAGGCTCGGGGGTGGAGCTAACGTTGTGAGCGACGGTTACACCAAAGGGGATGGCCTTGGCGCTGAGATCGTGGGTACTTTCATCCTTGTTTACACCGTCTTCTCCGCCACTGATGCTAAACGTAGCGCCAGAGACTCACATGTTCCGATATTGGCGCCGCTACCAATTGGGTTTGCAGTGTTCTTAGTCCACTTGGCAACAATCCCGATCACGGGCACCGGCATCAACCCGGCTCGGAGTTTGGGAGCGGCCATCATCTTCAACAAGGACAAAGCGTGGGATGATCATTGGATATTCTGGGTTGGACCGTTCATCGGAGCAGCATTGGCAGCTTTATATCATCAAGTCGTGATTAGAGCCATTCCTTTCAAGTCCAAGTGA 879 52.67 MEAKEEDVRLGANRFTERQPIGTAAQSQDDAKDYKEPPPAPLFEPEELTSWSFYRAGIAEFFATFLFLYITVLTVMGVTRSKEADGNTCNTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFQPKPYERLGGGANVVSDGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDKAWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKSK* 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5583608 5585035 - CsaV3_5G008950.1 Csa05g00796 529183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00796 292 Gene3D Glycerol uptake facilitator protein. 40 291 IPR023271 -
Csa05g00796 292 SUPERFAMILY Aquaporin-like 46 285 IPR023271 -
Csa05g00796 292 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 292 IPR034294 -
Csa05g00796 292 TIGRFAM MIP: MIP family channel proteins 59 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g00796 292 PANTHER AQUAPORIN PIP 1-3 1 292 - -
Csa05g00796 292 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g00796 292 PRINTS Major intrinsic protein family signature 101 125 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g00796 292 PRINTS Major intrinsic protein family signature 138 157 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g00796 292 PRINTS Major intrinsic protein family signature 187 205 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g00796 292 PRINTS Major intrinsic protein family signature 223 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g00796 292 PRINTS Major intrinsic protein family signature 263 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g00796 292 ProSitePatterns MIP family signature. 119 127 IPR022357 -
Csa05g00796 292 MobiDBLite consensus disorder prediction 1 39 - -
Csa05g00796 292 Pfam Major intrinsic protein 47 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g00796 292 CDD MIP 55 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01348 Csa-Chr2:12986776 Csa05g00796 Csa-Chr5:5583608 1.30E-18 dispersed
Csa03g03096 Csa-Chr3:29026223 Csa05g00796 Csa-Chr5:5583608 6.48E-10 dispersed
Csa05g00272 Csa-Chr5:1667723 Csa05g00796 Csa-Chr5:5583608 1.93E-50 dispersed
Csa05g00796 Csa-Chr5:5583608 Csa06g01193 Csa-Chr6:10078532 6.33E-150 dispersed
Csa05g00795 Csa-Chr5:5577371 Csa05g00796 Csa-Chr5:5583608 0 tandem
Csa05g00796 Csa-Chr5:5583608 Csa05g00797 Csa-Chr5:5589761 1.23E-131 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00796 K09872 - csv:101215145 581.252