Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00797 ATGGAGGGAAAGGAGGAGGATGTTCGATTGGGAGCCAATAAGTTTAACGAGAGGCAGCCCATTGGGACGGCAGCGCAGAGCCAAGACGATGCCAAGGACTACAAGGAGCCACCACCGGCTCCTCTCTTTGAGCCAGAGGAGCTCACTTCATGGTCTTTTTACAGAGCTGGAATCGCCGAGTTTTTCGCTACTTTTCTCTTCCTTTACATCACCGTTTTGACCGTCATGGGTGTCACCCGGTCCAAGGAAGCGGATGGTAATACCTGTAACACCGTCGGGATTCAGGGCATTGCTTGGGCTTTCGGTGGTATGATTTTTGCTCTCGTTTACTGTACTGCTGGAATCTCTGGTGGCCACATTAACCCGGCGGTCACTTTTGGGTTGTTTCTGGCGAGGAAATTGTCGTTGACTAGGGCGATTTTCTACATTGTGATGCAATGCCTTGGTGCCATCTGCGGCGCGGGAGTGGTGAAGGGGTTCCAACCCAAGCCCTATGAAAGGCTCGGGGGTGGAGCTAACGTTGTGAGCGACGGTTACACCAAAGGGATGGCCTTGGCGCTGAGATCGTGGGTACTTTCATCCTTGTTTACACCGTCTTCTCCGCCACTGATGCTAAACGTAGCGCCAGAGACTCACACGTTCCGATATTGGCGCCGCTACCAATTGGGTTTGCAGTGTTCTTAG 684 52.78 MEGKEEDVRLGANKFNERQPIGTAAQSQDDAKDYKEPPPAPLFEPEELTSWSFYRAGIAEFFATFLFLYITVLTVMGVTRSKEADGNTCNTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFQPKPYERLGGGANVVSDGYTKGMALALRSWVLSSLFTPSSPPLMLNVAPETHTFRYWRRYQLGLQCS* 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5589761 5591210 - CsaV3_5G008960.1 Csa05g00797 529184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00797 227 PANTHER AQUAPORIN PIP1-2 1 186 - -
Csa05g00797 227 PRINTS Major intrinsic protein family signature 138 157 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g00797 227 PRINTS Major intrinsic protein family signature 101 125 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g00797 227 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g00797 227 Gene3D Glycerol uptake facilitator protein. 40 197 IPR023271 -
Csa05g00797 227 SUPERFAMILY Aquaporin-like 46 179 IPR023271 -
Csa05g00797 227 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 186 IPR034294 -
Csa05g00797 227 Pfam Major intrinsic protein 47 186 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g00797 227 ProSitePatterns MIP family signature. 119 127 IPR022357 -
Csa05g00797 227 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00797 Csa-Chr5:5589761 Csa05g00795 Csa-Chr5:5577371 4.63E-126 dispersed
Csa05g00796 Csa-Chr5:5583608 Csa05g00797 Csa-Chr5:5589761 1.23E-131 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00797 K09872 - csv:101215145 367.466