Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00816 ATGACGATTTTATCCTCTCCCCCCCTCGCCCTCGCCCTCCTCACTCTCTTCGCCGTCCTTTTCCCCCTGTTTCCGTCGATCCAAGCTCTCGGTTCAGCCTCTACTCTTGCTGTTAGCTACGGCTCCCGCACCGTCTGTGGCATCGTCGCCGAGCAGCCGACTCAAAGGATTTTGTGTTTCCGTGACGGTCAAACCATTTTTATCGAACCCGGTATATCCTTCTCCGCTGTATCCGGTGGTCGGAATACTTTCTGCGGTATAAGGTCCGGCGGCTACACTATACTCTGTTGGAACTTCAACTTGACCACGGCTGCGTTTACCCGGAGAAGACTTTACTATAACCCCAACGTTCTTCTCGAGAATCTCGCGGTCGGCGACGACCAAATCTGCGCGACAGTCGTTGGTGCCGGCAATGTAACTTGCTGGCGAGATGGCAACAAAGTGATAGGTGGATTTTCTTCTCTTCTATATGATTCTATCTCTTCTGGGTACGGGTTTTCTTGTGGGATTTTGAAAGGGAATCAATCTATTCGATGTTGGGGTAGAAATTCGTCGATTGCAACCGAAATCGAAAATGGGTTTCGTAATATTTCAATGTTGAGTATCGTCGCCGGTGGGTTTCATGTTTGTGGATTGAATATCTCTGGTGGGTTAGTTTGTAAAGGGAATAATGATTTTGGGCAGTTGGATTTTCCTTCAAATTATTCTGTGGAGTTCTCTGAATTAGCTCTCGGTGAACGCCATAGCTGTGGGATTTTAGTCTCGAATCGATCGGTTATATGTTGGGGTGGCTTAGGATTTTCTGTTGATTTGATTCGTGAAACTTCGTTTGAATTAATTTCTTCAGGATCTGATTTTGTTTGTGGTTTAACAACGAGTAATTTCTCTGTTCTTTGTTGGGGGCCTGGTTGGTCCAATAATTCTTTAAGTCCTTCTTCACTTTCTCTTCCCAAGATTCTTCCTGGTCCTTGTGTTCTTCAATCTTCTTGTAGTTGTGGGGTTTATCCTTTATCTCAAACCCTCTGTTCTAACTCTGGGAATGTCTGTAATCGCTGTTTTTTTACTGTTCCAACGCCATCGTCGCCGCAACCATTGCCTTCCTCACCTCCACGGTCGCCACCGGTGACAACCCCGTCGCCTACGCCAGCTGCCTTGAAAAGGGGTTTGTTGGCATTTGGCATTGTGGGATCAGTTGGGGCCTTTGCTGGGATTTGCACAATTATTTATTGTTTGTGGACCGGCGTTTGTTTTGGGAATAAGAAGATACATAACTCTGTTCAGCCTACCATCACTAGAGCTGCTAGTTCTAATGGTGGAACGACAACTTCGAACACAAACAACAGCCCTCCGTCGCGGTCGTCGACAATAAGGCGACAAGGTTCACGGATAATGCGAAGGCAAAGGAGTGGTACGTCGTCCAAGCACGCGGATAGAGCAGAAGAATTCACTCTAGCTGAGCTTGCCATGGCTACTAATGATTTCTCACCTGAGAATAAGATTGGTGAGGGGAGCTTCGGCGTCGTGTACCGAGGGAAACTGTACGATGGTCGGGAAGTAGCGATAAAGAGAGGTGAAACAGGGCAGAAAACTAAGAAGTTCCAGGAGAAAGAGAGTGCTTTTGATTCAGAATTGGCCTTCTTGTCTAGACTCCATCATAAGCATTTGGTTAGGCTTGTTGGGTACTGTGAAGAGAAAGATGAGAGGTTGTTGGTTTATGAGTATATGAAAAATGGCGCACTTTATAATCATCTTCATGACAAGAACAACTTTGAGAAAGCCAGTAGTGTTGTAAATTCTTGGAAAATGAGGATCAAAATAGCTTTAGATGCAGCTAGAGGGATTGAATATCTTCATAACTATGCAGTCCCTCCCATAATCCATAGGGATATTAAATCATCCAATATTCTTCTCGACGCTAATTGGACGGCGAGGGTATCTGATTTCGGGTTGTCATTGATGAGTCCAGGGTCGGATCGTGATTATCGGCCGACAAAGGCAGCTGGGACGGTTGGTTATATTGATCCTGAGTACTATGGATTAAATGTTTTGACTGCTAAGAGTGATGTGTATGGGCTTGGGGTGGTGTTGTTGGAGCTTTTGACAGGGAAGAGAGCTATATTCAAGGATGAGGAGCAGGGAGGGACACCGGTGAGTGTGGTCGATTATGCGGTGCCTGTGATTATGGCGGGGGAATTAGGGAAGATTTTGGATCAAAGAGTCGGACCACCGCAGATCAACGAAGCGGAGGCAGTGGAGCTAGTGGCTTACACGGCGATGCATTGCGTGCATTTGGAAGGGAAAGACCGACCCACGATGACCGACATTGTTTCTAATTTGGAACGAGCTTTGAATCTCTGTGATGATAGCCATGGTAGCATCTCTAGTGGTGGAATTTCCATTGTTTCAGAGTAA 2412 46.27 MTILSSPPLALALLTLFAVLFPLFPSIQALGSASTLAVSYGSRTVCGIVAEQPTQRILCFRDGQTIFIEPGISFSAVSGGRNTFCGIRSGGYTILCWNFNLTTAAFTRRRLYYNPNVLLENLAVGDDQICATVVGAGNVTCWRDGNKVIGGFSSLLYDSISSGYGFSCGILKGNQSIRCWGRNSSIATEIENGFRNISMLSIVAGGFHVCGLNISGGLVCKGNNDFGQLDFPSNYSVEFSELALGERHSCGILVSNRSVICWGGLGFSVDLIRETSFELISSGSDFVCGLTTSNFSVLCWGPGWSNNSLSPSSLSLPKILPGPCVLQSSCSCGVYPLSQTLCSNSGNVCNRCFFTVPTPSSPQPLPSSPPRSPPVTTPSPTPAALKRGLLAFGIVGSVGAFAGICTIIYCLWTGVCFGNKKIHNSVQPTITRAASSNGGTTTSNTNNSPPSRSSTIRRQGSRIMRRQRSGTSSKHADRAEEFTLAELAMATNDFSPENKIGEGSFGVVYRGKLYDGREVAIKRGETGQKTKKFQEKESAFDSELAFLSRLHHKHLVRLVGYCEEKDERLLVYEYMKNGALYNHLHDKNNFEKASSVVNSWKMRIKIALDAARGIEYLHNYAVPPIIHRDIKSSNILLDANWTARVSDFGLSLMSPGSDRDYRPTKAAGTVGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGKRAIFKDEEQGGTPVSVVDYAVPVIMAGELGKILDQRVGPPQINEAEAVELVAYTAMHCVHLEGKDRPTMTDIVSNLERALNLCDDSHGSISSGGISIVSE* 804
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5892377 5896477 - CsaV3_5G010140.1 Csa05g00816 529203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00816 803 Gene3D - 153 314 IPR009091 -
Csa05g00816 803 SUPERFAMILY RCC1/BLIP-II 159 306 IPR009091 -
Csa05g00816 803 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 11 799 IPR044815 GO:0004674
Csa05g00816 803 Gene3D Transferase(Phosphotransferase) domain 1 575 792 - -
Csa05g00816 803 MobiDBLite consensus disorder prediction 432 477 - -
Csa05g00816 803 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672|GO:0006468
Csa05g00816 803 ProSitePatterns Protein kinases ATP-binding region signature. 500 522 IPR017441 GO:0005524
Csa05g00816 803 ProSiteProfiles Protein kinase domain profile. 494 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g00816 803 MobiDBLite consensus disorder prediction 360 380 - -
Csa05g00816 803 Gene3D Phosphorylase Kinase; domain 1 455 574 - -
Csa05g00816 803 SUPERFAMILY RCC1/BLIP-II 65 186 IPR009091 -
Csa05g00816 803 SMART serkin_6 494 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g00816 803 Pfam Protein kinase domain 496 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g00816 803 SUPERFAMILY Protein kinase-like (PK-like) 475 779 IPR011009 -
Csa05g00816 803 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 11 799 - -
Csa05g00816 803 MobiDBLite consensus disorder prediction 432 458 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02515 Csa-Chr1:22182597 Csa05g00816 Csa-Chr5:5892377 0 dispersed
Csa05g00816 Csa-Chr5:5892377 Csa06g00271 Csa-Chr6:1917786 2.30E-150 dispersed
Csa06g02563 Csa-Chr6:22669931 Csa05g00816 Csa-Chr5:5892377 6.59E-10 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78227 PF00069 Pkinase 1.90E-45 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00816 - - csv:101215625 1450.26