Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00818 ATGGCGTCAATCTCTTCAAGCCCTCGTTCCGTTGAAGACATCTTCAAGGATTACAACGCTCGTCGTACAGGCCTTGTTCGAGCCCTCACTTATGATGTCGATGAGTTTTACTCGCTTTGCGATCCTGAGAAGGAGAATTTGTGTTTGTATGGACATCCGAATGAGTCTTGGGAGGTGACTCTGCCTGCTGAGGAAGTTCCATCTGAGCTCCCTGAACCTGCGTTGGGGATCAATTTTGCTAGAGATGGGATGAAGCGTAGAGACTGGCTTTCATTGGTGGCTGTGCACAGCGATTGTTGGTTGCTTTCAGTGGCGTTCTATTTTGGTGCTCAACTCAACCGCAATGAGCGGAAGCGACTATTTAGTATGATTAATGATCTACCCACTCTATTTGAAGTTGCATCCGGAAGGAAAGCTGTTAAAGACAAACCCAGTATGGATAGTGGAAGTAAATCTAGAAACAGCACGAAGAGGACACTAGATGGGTCGACTAGAAACAGCAATCCAAAACTACTTGAAGAGAGTTATGGAGAGGATGAAGATGAGCATGGTGATACACTCTGTGGAAGCTGTGGTGGGAACTACAACGCGGACGAGTTTTGGATTGGATGTGACATCTGTGAGAAGTGGTTCCATGGAAAATGTGTGAGGATAACACCTGCCAAGGCTGAGAATATCAAGCAGTACAAATGCCCCTCTTGCAGCACAAAAAGAGGAAGACTGTAG 726 46.28 MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFYFGAQLNRNERKRLFSMINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKRTLDGSTRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICEKWFHGKCVRITPAKAENIKQYKCPSCSTKRGRL* 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5926088 5936822 + CsaV3_5G010160.1 Csa05g00818 529205

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00818 241 MobiDBLite consensus disorder prediction 141 182 - -
Csa05g00818 241 ProSiteProfiles Zinc finger PHD-type profile. 185 237 IPR019787 -
Csa05g00818 241 SUPERFAMILY FYVE/PHD zinc finger 176 238 IPR011011 -
Csa05g00818 241 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 2 1 240 - -
Csa05g00818 241 PANTHER CPG BINDING PROTEIN 1 240 IPR045104 GO:0006355|GO:0042393
Csa05g00818 241 ProSitePatterns Zinc finger PHD-type signature. 188 234 IPR019786 -
Csa05g00818 241 CDD PHD_AL_plant 187 237 IPR044104 -
Csa05g00818 241 MobiDBLite consensus disorder prediction 149 171 - -
Csa05g00818 241 Pfam Alfin 10 135 IPR021998 GO:0006355|GO:0042393
Csa05g00818 241 SMART PHD_3 187 235 IPR001965 -
Csa05g00818 241 Pfam PHD-finger 188 236 IPR019787 -
Csa05g00818 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 236 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00818 - - - csv:101211934 506.908
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01621 Csa-Chr2:15351291 Csa05g00818 Csa-Chr5:5926088 8.21E-24 dispersed
Csa03g00676 Csa-Chr3:5966227 Csa05g00818 Csa-Chr5:5926088 2.44E-108 transposed
Csa06g02014 Csa-Chr6:18140076 Csa05g00818 Csa-Chr5:5926088 4.98E-117 transposed
Csa07g02370 Csa-Chr7:21860290 Csa05g00818 Csa-Chr5:5926088 5.65E-120 transposed
Csa03g03069 Csa-Chr3:28902930 Csa05g00818 Csa-Chr5:5926088 3.00E-141 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g55 . Blo13g00799 . . . Bpe15g01161 . . Cmo04g00150 Cmo04g01181 Cma04g01114 Cma04g00152 Car04g00146 . . . Cpe01g00130 . . . . . . . Cla07g00398 Cam07g0425 Cec07g0477 Cco07g0433 Clacu07g0425 Cmu07g0469 Cre07g0775 . . . . . . Chy10g00423 Cme10g01083 . Blo04g00232 Bda14g00249 . . . . . . . . . . . . Cpe01g01035 . . . . . . . . . . . . . . . . Csa05g00818 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g00676 . 1 252 Alfin-like Transcription Factor Family AT1G14510 84.1 6.2e-114 407.1
Csa06g02014 . 9 251 Alfin-like Transcription Factor Family AT1G14510 75.7 1.3e-95 346.3
Csa07g02370 . 10 248 Alfin-like Transcription Factor Family AT1G14510 67.9 6.1e-93 337.4
Csa03g03069 . 8 237 Alfin-like Transcription Factor Family AT1G14510 60.0 1.9e-78 289.3
Csa05g00818 . 8 238 Alfin-like Transcription Factor Family AT1G14510 60.2 1.9e-78 289.3
Csa06g02014 . 1 253 Alfin-like Transcription Factor Family AT5G26210 79.1 2.3e-108 388.7
Csa07g02370 . 1 250 Alfin-like Transcription Factor Family AT5G26210 64.5 8.3e-98 353.6
Csa03g00676 . 9 254 Alfin-like Transcription Factor Family AT5G26210 72.8 1.2e-93 339.7
Csa05g00818 . 7 240 Alfin-like Transcription Factor Family AT5G26210 58.7 4.1e-81 298.1
Csa03g03069 . 8 241 Alfin-like Transcription Factor Family AT5G26210 58.1 1.0e-79 293.5
Csa06g02014 . 1 253 Alfin-like Transcription Factor Family AT3G42790 74.7 6.0e-101 364.0
Csa07g02370 . 1 250 Alfin-like Transcription Factor Family AT3G42790 64.5 9.0e-97 350.1
Csa03g00676 . 9 256 Alfin-like Transcription Factor Family AT3G42790 71.8 2.8e-90 328.6
Csa05g00818 . 7 240 Alfin-like Transcription Factor Family AT3G42790 60.6 4.8e-82 301.2
Csa03g03069 . 8 239 Alfin-like Transcription Factor Family AT3G42790 58.3 6.5e-79 290.8
Csa05g00818 . 1 240 Alfin-like Transcription Factor Family AT5G05610 77.2 3.3e-112 401.4
Csa03g03069 . 1 241 Alfin-like Transcription Factor Family AT5G05610 75.2 5.4e-107 384.0
Csa07g02370 . 10 250 Alfin-like Transcription Factor Family AT5G05610 63.6 7.8e-90 327.0
Csa06g02014 . 8 253 Alfin-like Transcription Factor Family AT5G05610 63.8 5.1e-89 324.3
Csa03g00676 . 9 254 Alfin-like Transcription Factor Family AT5G05610 61.8 3.2e-83 305.1
Csa05g00818 . 43 240 Alfin-like Transcription Factor Family AT3G11200 80.1 1.6e-95 345.9
Csa03g03069 . 43 241 Alfin-like Transcription Factor Family AT3G11200 77.3 1.9e-88 322.4
Csa07g02370 . 44 250 Alfin-like Transcription Factor Family AT3G11200 64.8 3.4e-74 275.0
Csa06g02014 . 44 253 Alfin-like Transcription Factor Family AT3G11200 65.6 1.7e-73 272.7
Csa03g00676 . 44 254 Alfin-like Transcription Factor Family AT3G11200 62.6 7.4e-69 257.3
Csa03g00676 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.1 1.4e-76 283.1
Csa06g02014 . 1 158 Alfin-like Transcription Factor Family AT2G02470 77.8 4.1e-65 245.0
Csa07g02370 . 10 160 Alfin-like Transcription Factor Family AT2G02470 77.5 3.0e-63 238.8
Csa03g03069 . 8 135 Alfin-like Transcription Factor Family AT2G02470 74.6 9.6e-54 207.2
Csa05g00818 . 8 155 Alfin-like Transcription Factor Family AT2G02470 67.5 1.3e-53 206.8
Csa06g02014 . 1 167 Alfin-like Transcription Factor Family AT5G20510 78.0 6.2e-74 273.9
Csa07g02370 . 1 162 Alfin-like Transcription Factor Family AT5G20510 74.5 5.1e-68 254.2
Csa03g00676 . 3 172 Alfin-like Transcription Factor Family AT5G20510 71.5 7.4e-67 250.4
Csa05g00818 . 7 157 Alfin-like Transcription Factor Family AT5G20510 62.4 1.3e-52 203.0
Csa03g03069 . 7 157 Alfin-like Transcription Factor Family AT5G20510 63.1 3.9e-52 201.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001062 3 2 2 5 5 2 4 2 3 2 2 2 3 2 2 4 2 2 4 3 2 2 2 3 3 3 2 3 3 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31712 PF12165 Alfin 2.10E-67 No_clan Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00818 Csa_Chr00 FPKM 0.0 0.0 0.0 0.0 0.047947 0.0 0.0 0.509699 0.307964 0.348472
Csa05g00818 Csa_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.100074 0.0 0.087863