Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00818 ATGGCGTCAATCTCTTCAAGCCCTCGTTCCGTTGAAGACATCTTCAAGGATTACAACGCTCGTCGTACAGGCCTTGTTCGAGCCCTCACTTATGATGTCGATGAGTTTTACTCGCTTTGCGATCCTGAGAAGGAGAATTTGTGTTTGTATGGACATCCGAATGAGTCTTGGGAGGTGACTCTGCCTGCTGAGGAAGTTCCATCTGAGCTCCCTGAACCTGCGTTGGGGATCAATTTTGCTAGAGATGGGATGAAGCGTAGAGACTGGCTTTCATTGGTGGCTGTGCACAGCGATTGTTGGTTGCTTTCAGTGGCGTTCTATTTTGGTGCTCAACTCAACCGCAATGAGCGGAAGCGACTATTTAGTATGATTAATGATCTACCCACTCTATTTGAAGTTGCATCCGGAAGGAAAGCTGTTAAAGACAAACCCAGTATGGATAGTGGAAGTAAATCTAGAAACAGCACGAAGAGGACACTAGATGGGTCGACTAGAAACAGCAATCCAAAACTACTTGAAGAGAGTTATGGAGAGGATGAAGATGAGCATGGTGATACACTCTGTGGAAGCTGTGGTGGGAACTACAACGCGGACGAGTTTTGGATTGGATGTGACATCTGTGAGAAGTGGTTCCATGGAAAATGTGTGAGGATAACACCTGCCAAGGCTGAGAATATCAAGCAGTACAAATGCCCCTCTTGCAGCACAAAAAGAGGAAGACTGTAG 726 46.28 MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFYFGAQLNRNERKRLFSMINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKRTLDGSTRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICEKWFHGKCVRITPAKAENIKQYKCPSCSTKRGRL* 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5926088 5936822 + CsaV3_5G010160.1 Csa05g00818 529205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00818 241 MobiDBLite consensus disorder prediction 141 182 - -
Csa05g00818 241 ProSiteProfiles Zinc finger PHD-type profile. 185 237 IPR019787 -
Csa05g00818 241 SUPERFAMILY FYVE/PHD zinc finger 176 238 IPR011011 -
Csa05g00818 241 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 2 1 240 - -
Csa05g00818 241 PANTHER CPG BINDING PROTEIN 1 240 IPR045104 GO:0006355|GO:0042393
Csa05g00818 241 ProSitePatterns Zinc finger PHD-type signature. 188 234 IPR019786 -
Csa05g00818 241 CDD PHD_AL_plant 187 237 IPR044104 -
Csa05g00818 241 MobiDBLite consensus disorder prediction 149 171 - -
Csa05g00818 241 Pfam Alfin 10 135 IPR021998 GO:0006355|GO:0042393
Csa05g00818 241 SMART PHD_3 187 235 IPR001965 -
Csa05g00818 241 Pfam PHD-finger 188 236 IPR019787 -
Csa05g00818 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 236 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01621 Csa-Chr2:15351291 Csa05g00818 Csa-Chr5:5926088 8.21E-24 dispersed
Csa03g00676 Csa-Chr3:5966227 Csa05g00818 Csa-Chr5:5926088 2.44E-108 transposed
Csa06g02014 Csa-Chr6:18140076 Csa05g00818 Csa-Chr5:5926088 4.98E-117 transposed
Csa07g02370 Csa-Chr7:21860290 Csa05g00818 Csa-Chr5:5926088 5.65E-120 transposed
Csa03g03069 Csa-Chr3:28902930 Csa05g00818 Csa-Chr5:5926088 3.00E-141 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31712 PF12165 Alfin 2.10E-67 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00818 - - csv:101211934 506.908