Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00823 ATGTGCAGTGGCTCTAAGAATAAAGTTGCTTCCACGAATTCCGCCATGGAAGCTAGGTTTCTGAAGCTTAGCGATGGGGGTTTATTTTCTGAAAATTCGATCTTGCTTGAACTTTCAGCCTCTGATGATGTAGAAGGGTTCAAGAGAGAGGTTGAAGAAAAGGATTTGGATGTTGATGAGCCAAGCTGCTGGTATGGAAGAGGAATTGGGTCAAAGAAGATGGGTTTTGAAGAAAGAACTCCGTTGATGATTGCTGCCATGTTTGGAAGCTCCAAGGTTGTCAAGTACTTAATTGAAACAGGCAAGGTTGATGTCAACAGGGCCTGTGGTTCAGATTTGACCACCGCCCTTCACTGTGCTACTGCTGGTGGCTCTTGTTCTTCCCTTGAGACCATCAAGCTCTTGCTCGACGGATCTGCTGATGTCGATTGTGTCGACGCCTACGGGAGAAAACCTGTGGATTTGATTGTTTCAGCTTGCAGGATGGTGTTGAATTCAGGAAGAAAGGCTATGGAGATGTTGTTGAGAGGAGATGGTATGGCTGGGGAAGCTGATCTGAGCCTTTACCTTGAAGAAGACCAGCAGAAGATCACAGCTTCCCAGTTCTCAAAAGAAGGAAGTGACAAGAAAGAGTATCCAGTTGATGTATCGCTGCCCGACATCAACAGTGGGATCTACGGTACTGATGATTTCAGGATGTATACTTTCAAAGTGAAGCCTTGTTCGAGGGCGTATTCGCATGATTGGACCGAGTGCCCTTTCGTTCACCCTGGTGAGAACGCCAGGCGTAGAGACCCCAGGAAGTACCCATATAGTTGCGTTCCATGCCCTGAATTCCGCAAGGGGGCTTGTCCAAAGGCAGATTCCTGTGAGTATGCACATGGTGTTTTCGAGTCTTGGCTCCACCCTGCTCAATACCGAACCCGGCTCTGTAAGGATGAGACTGGCTGCACAAGGAAAGTTTGCTTCTTTGCTCACAAACCTGATGAGTTGCGCCCAGTATATGCATCAACAGGCTCAGGCATGCCTTCACCCCGGTCTCTTTCGAGCAACACTGGAGATATGTCTACCATGAGCCCGTTGGCTCTTGGTTCATCATCGTTGTCGTTGCCAACAACCTCAACACCTCCCATGTCTCCCTTAGCATCAGTGTCTTCTCCTAAAAATGGAAACTTGTGGCAGAACAAGATTAACCTTACCCCTCCTGCTCTGCAGCTCCCTGGTAGTCGGTTAAAGGCTACCTTGAGTGCAAGAGATTTGGATTTAGAGATGGAATTGCTCGGATTAGAAAAGAACGTGAGCCAATTACAACATCAACAACAGTTGATTGACGAGATTAGCCGGCTCTCATCTCCTTACTGGAATGCAGATGTAAGCAGGACTGCAGAGTTGAAGCCATCGAACCTTGATGACATGTTTGGATCATTAGATTCTTCCTTATTGTCTCAGTTGCAAGGCGCCTCACTAAAAACACCAATCTCAGCTCAAGTTCAATCCCCGACTGGGCTGCAGATGCGCCAAAGCATGAGCCAACTTCGTGCAAGTTACCCAGCTAATAACCTATCATCCTCACCTGTAAAGAAACCCTCCTCTTTTGGCTTTGACTCATCAAGTGCAGTGGCAGCTGCAGTGATGAACTCAAGGTCTGCTGCCTTTGCAAAACGAAGCCAGAGTTTCATTGATCGAGCTGCAGTATCCCGTCTTCCTGGGTTCACCGGAGCTGCAAATTCTGCAGCTACCATGTCTTCCCATCTCTCAGATTGGAACTCCCCTGATGGCAAACTAGACTGGGGAATGAATGGCACCGATCTCAACAAACTCAAGAAATCTGCTTCCTTTGGTATCCGAAATGGAACTCCCACGTTTGCTCCACCAGTAGAGGAACCCGATGTCTCTTGGGTTAACTCTTTGGTCAAAGATGTTCCCTCGGAAAGCTTTGGACTGTTTGGTGCCGAGAAGCGTCCATACAACCTCAAAAGAGAAATCAATGAGATGCTCCCATCCTGGATGGAGCAGCAGTTGTATGCAGAGCAGGAGCAGATAGTGGCATAA 2052 47.81 MCSGSKNKVASTNSAMEARFLKLSDGGLFSENSILLELSASDDVEGFKREVEEKDLDVDEPSCWYGRGIGSKKMGFEERTPLMIAAMFGSSKVVKYLIETGKVDVNRACGSDLTTALHCATAGGSCSSLETIKLLLDGSADVDCVDAYGRKPVDLIVSACRMVLNSGRKAMEMLLRGDGMAGEADLSLYLEEDQQKITASQFSKEGSDKKEYPVDVSLPDINSGIYGTDDFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGACPKADSCEYAHGVFESWLHPAQYRTRLCKDETGCTRKVCFFAHKPDELRPVYASTGSGMPSPRSLSSNTGDMSTMSPLALGSSSLSLPTTSTPPMSPLASVSSPKNGNLWQNKINLTPPALQLPGSRLKATLSARDLDLEMELLGLEKNVSQLQHQQQLIDEISRLSSPYWNADVSRTAELKPSNLDDMFGSLDSSLLSQLQGASLKTPISAQVQSPTGLQMRQSMSQLRASYPANNLSSSPVKKPSSFGFDSSSAVAAAVMNSRSAAFAKRSQSFIDRAAVSRLPGFTGAANSAATMSSHLSDWNSPDGKLDWGMNGTDLNKLKKSASFGIRNGTPTFAPPVEEPDVSWVNSLVKDVPSESFGLFGAEKRPYNLKREINEMLPSWMEQQLYAEQEQIVA* 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6068842 6072208 + CsaV3_5G010210.1 Csa05g00823 529210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00823 683 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 19 681 - -
Csa05g00823 683 MobiDBLite consensus disorder prediction 334 385 - -
Csa05g00823 683 SUPERFAMILY Ankyrin repeat 68 158 IPR036770 -
Csa05g00823 683 MobiDBLite consensus disorder prediction 340 385 - -
Csa05g00823 683 SMART c3hfinal6 305 328 IPR000571 GO:0046872
Csa05g00823 683 SMART c3hfinal6 270 296 IPR000571 GO:0046872
Csa05g00823 683 Pfam Ankyrin repeats (3 copies) 75 144 IPR002110 GO:0005515
Csa05g00823 683 ProSiteProfiles Ankyrin repeat profile. 77 101 IPR002110 GO:0005515
Csa05g00823 683 ProSiteProfiles Zinc finger C3H1-type profile. 270 297 IPR000571 GO:0046872
Csa05g00823 683 SMART ANK_2a 112 144 IPR002110 GO:0005515
Csa05g00823 683 SMART ANK_2a 77 107 IPR002110 GO:0005515
Csa05g00823 683 Gene3D - 30 174 IPR036770 -
Csa05g00823 683 ProSiteProfiles Ankyrin repeat region circular profile. 77 101 - -
Csa05g00823 683 PANTHER UNKEMPT FAMILY MEMBER 19 681 IPR045234 -
Csa05g00823 683 Gene3D - 271 333 - -
Csa05g00823 683 ProSiteProfiles Ankyrin repeat profile. 112 147 IPR002110 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03622 Csa-Chr3:32257914 Csa05g00823 Csa-Chr5:6068842 1.10E-152 dispersed
Csa04g00425 Csa-Chr4:2646906 Csa05g00823 Csa-Chr5:6068842 1.58E-49 dispersed
Csa05g00823 Csa-Chr5:6068842 Csa07g00484 Csa-Chr7:3508522 2.39E-42 dispersed
Csa05g00823 Csa-Chr5:6068842 Csa06g01420 Csa-Chr6:12114956 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31713 PF12796 Ank_2 2.30E-09 CL0465 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00823 - - csv:101203102 1311.21