Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00829 ATGTGCGCAGTTGCACCCTCCACAACCCCCATGACTCCTGTTTTCTCATCTCCAAAGCTCCCTTCACTTCTTTGCAAATCCTCCTCCTCTTCCTCTTCCTCTTCCTCTTCCCCTAGATCCTTATCCGCTCCAATCAACCTTCATGTTTCTGCATCCCCTTCCCCCTCCTCCTCCTCTGTTTCCCATCTTGATACCCTTTTGAAGAGGAAGAGGCCCTCCAGAATCCACTTGCCGCAGAGTATGCCCTCCATTGGATTTGGAATATTCGACACGCCGGAAATTATGGAGGAGGAAGGAGAAGGATATTCCGTTTTTTCTAAAAGAGGAAGAAGACGAATCAGTGCTATGGAGGATCGATTCTCAGTTACCCTCGGGATTCAAGCAGATTCTCGACAGGCTTTCTTCGGAGTTTTCGACGGACACGGGGGAGCGAAAGTAGCGGAAATCGCAGCGAAGCGATTGAGTGAAAACGTAATCGATCAAGTATGGAGAAGAACAGAATCGGAAGTCGAGGAAGCGATCAAAGACGGCTATCTAAGGACGGATCGGGAAGTATCAGAGGAAGGCGTGAGCGGCGGCGGCGCTTGTTGCGTCACTGCATTGATACGGAACGGGAATCTGGCGGTGTCGAACGTCGGCGATTGTCGCGCGGTGTTGAGTCGAAAGGGAAGAGCGGAAGCCCTAACCTCGGATCACATGGCGGGAAGAGAAGACGAGAGAAACCGGATCGAGAAATCGGGCGGTTATGTGGATTTTTGCGGTGGCGGATGGAGAGTTCAAGGAACATTAGCCGTATCAAGAGCCATCGGAGATGAGCATCTGAAACAGTGGGTGATTTCGGAGCCGGAGACGAGAGTGATGAAAATTGAAGATGATTGTCATTTCTTGATTCTTGCTTCCGATGGTCTTTGGGACAAGGTTACAAATCAAGAAGCAGTAGACATGGTAGAAGCAGTTTGTGGCGTAGAGATAGCGAAGAAGAAACCAATTAATCCAAAATTGATAATGTCAGCATGCAAACAGTTGGTGACATTGTCAACATCAAGAGGCTCACTCGACGATACCACTGTTATGATCATTAAATTAAATTAA 1092 48.53 MCAVAPSTTPMTPVFSSPKLPSLLCKSSSSSSSSSSSPRSLSAPINLHVSASPSPSSSSVSHLDTLLKRKRPSRIHLPQSMPSIGFGIFDTPEIMEEEGEGYSVFSKRGRRRISAMEDRFSVTLGIQADSRQAFFGVFDGHGGAKVAEIAAKRLSENVIDQVWRRTESEVEEAIKDGYLRTDREVSEEGVSGGGACCVTALIRNGNLAVSNVGDCRAVLSRKGRAEALTSDHMAGREDERNRIEKSGGYVDFCGGGWRVQGTLAVSRAIGDEHLKQWVISEPETRVMKIEDDCHFLILASDGLWDKVTNQEAVDMVEAVCGVEIAKKKPINPKLIMSACKQLVTLSTSRGSLDDTTVMIIKLN* 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6160066 6162451 + CsaV3_5G010270.1 Csa05g00829 529216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00829 363 CDD PP2Cc 101 362 IPR001932 -
Csa05g00829 363 Gene3D - 92 363 IPR036457 -
Csa05g00829 363 ProSitePatterns PPM-type phosphatase domain signature. 134 142 IPR000222 GO:0043169
Csa05g00829 363 SMART PP2C_SIG_2 117 362 IPR001932 -
Csa05g00829 363 MobiDBLite consensus disorder prediction 1 63 - -
Csa05g00829 363 ProSiteProfiles PPM-type phosphatase domain profile. 101 362 IPR001932 -
Csa05g00829 363 Pfam Protein phosphatase 2C 108 342 IPR001932 -
Csa05g00829 363 PANTHER PROTEIN PHOSPHATASE 2C 23 363 IPR015655 GO:0004722|GO:0006470
Csa05g00829 363 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED 23 363 - -
Csa05g00829 363 SMART PP2C_4 97 360 IPR001932 -
Csa05g00829 363 SUPERFAMILY PP2C-like 101 363 IPR036457 -
Csa05g00829 363 MobiDBLite consensus disorder prediction 9 63 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02526 Csa-Chr1:22272510 Csa05g00829 Csa-Chr5:6160066 6.11E-117 dispersed
Csa02g01777 Csa-Chr2:17244608 Csa05g00829 Csa-Chr5:6160066 1.16E-69 dispersed
Csa02g02502 Csa-Chr2:22052604 Csa05g00829 Csa-Chr5:6160066 2.03E-86 dispersed
Csa05g00829 Csa-Chr5:6160066 Csa06g01923 Csa-Chr6:17350468 1.40E-45 dispersed
Csa05g00829 Csa-Chr5:6160066 Csa03g02203 Csa-Chr3:19119262 2.61E-47 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00829 K17506 - csv:101208170 655.21