Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa05g00849 | ATGGGTGGGAATTCGCCCTGTGCATCGTGCAAACTCCTCCGGCGACGGTGTGCCAAAGACTGCATTTTTGCTCCCTATTTTCCCTCTGATGACCCCCACAAGTTTGCTATTGTCCATAAAGTTTTTGGTGCTAGCAATGTCAGCAAAATGTTGCAGGAGCTGCCAGTTCAGCAAAGAGGCGACGCGGTGATGAGTTTAGTTTATGAAGCAAGTGCAAGAGTAAGGGACCCAGTTTATGGTTGTGTAGGGGCAATTTCGTACTTACAAAATCAAGTTTCACAATTACAAATGCAATTGGCTGTTGCTCAAGCTGAGATTCTTTGTATCCAAATGCAACAAGACCACCCCGTTTTCCCAAATTGCCCTCAGATCCACTCCGACGATAAACCCTCATCTCTTCTACTCCCCCCGCCCTCTCCTCCCCCCTCTCAGTGCCTCAATTTTGCTGCTTCCTCTCCTAATGTAATTTATGACACCATTTTTGGACATGACATAGTTTCTTAA | 504 | 46.23 | MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPNCPQIHSDDKPSSLLLPPPSPPPSQCLNFAASSPNVIYDTIFGHDIVS* | 168 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 6402429 | 6403178 | + | CsaV3_5G010470.1 | Csa05g00849 | 529236 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa05g00849 | 167 | Pfam | Lateral organ boundaries (LOB) domain | 6 | 103 | IPR004883 | - | |
Csa05g00849 | 167 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 2 | 116 | - | - | |
Csa05g00849 | 167 | Coils | Coil | 85 | 105 | - | - | |
Csa05g00849 | 167 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 12-LIKE | 2 | 116 | - | - | |
Csa05g00849 | 167 | ProSiteProfiles | LOB domain profile. | 5 | 106 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g03551 | Csa-Chr1:32657337 | Csa05g00849 | Csa-Chr5:6402429 | 3.51E-60 | dispersed | |
Csa05g00849 | Csa-Chr5:6402429 | Csa06g01169 | Csa-Chr6:9817253 | 3.23E-59 | dispersed | |
Csa03g01679 | Csa-Chr3:12579300 | Csa05g00849 | Csa-Chr5:6402429 | 1.06E-40 | transposed | |
Csa05g00849 | Csa-Chr5:6402429 | Csa06g00193 | Csa-Chr6:1330357 | 5.17E-45 | wgd | |
Csa05g00849 | Csa-Chr5:6402429 | Csa06g01395 | Csa-Chr6:11927402 | 2.63E-61 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31715 | PF03195 | LOB | 3.90E-42 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa05g00849 | - | - | csv:101204801 | 327.791 |