Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00849 ATGGGTGGGAATTCGCCCTGTGCATCGTGCAAACTCCTCCGGCGACGGTGTGCCAAAGACTGCATTTTTGCTCCCTATTTTCCCTCTGATGACCCCCACAAGTTTGCTATTGTCCATAAAGTTTTTGGTGCTAGCAATGTCAGCAAAATGTTGCAGGAGCTGCCAGTTCAGCAAAGAGGCGACGCGGTGATGAGTTTAGTTTATGAAGCAAGTGCAAGAGTAAGGGACCCAGTTTATGGTTGTGTAGGGGCAATTTCGTACTTACAAAATCAAGTTTCACAATTACAAATGCAATTGGCTGTTGCTCAAGCTGAGATTCTTTGTATCCAAATGCAACAAGACCACCCCGTTTTCCCAAATTGCCCTCAGATCCACTCCGACGATAAACCCTCATCTCTTCTACTCCCCCCGCCCTCTCCTCCCCCCTCTCAGTGCCTCAATTTTGCTGCTTCCTCTCCTAATGTAATTTATGACACCATTTTTGGACATGACATAGTTTCTTAA 504 46.23 MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPNCPQIHSDDKPSSLLLPPPSPPPSQCLNFAASSPNVIYDTIFGHDIVS* 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6402429 6403178 + CsaV3_5G010470.1 Csa05g00849 529236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00849 167 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Csa05g00849 167 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 116 - -
Csa05g00849 167 Coils Coil 85 105 - -
Csa05g00849 167 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 2 116 - -
Csa05g00849 167 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03551 Csa-Chr1:32657337 Csa05g00849 Csa-Chr5:6402429 3.51E-60 dispersed
Csa05g00849 Csa-Chr5:6402429 Csa06g01169 Csa-Chr6:9817253 3.23E-59 dispersed
Csa03g01679 Csa-Chr3:12579300 Csa05g00849 Csa-Chr5:6402429 1.06E-40 transposed
Csa05g00849 Csa-Chr5:6402429 Csa06g00193 Csa-Chr6:1330357 5.17E-45 wgd
Csa05g00849 Csa-Chr5:6402429 Csa06g01395 Csa-Chr6:11927402 2.63E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31715 PF03195 LOB 3.90E-42 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00849 - - csv:101204801 327.791