Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Csa05g00859	ATGGTTAAAACTAAAAGGCGTGTATATGAATTCAAGCATCCGTTCAATGATTATCCATTCGAGGCAATGTGCTGCGGGTCTTGGCAAGCTGTGGAGAAAATAAGAATTCGTAATGGTTTAATAACCCTCCATTTAGTGAATGATCAGTTTATGGTTTTGGAAAGAGGCCCCTACTCGGATTTTCGGGTTCGGTCGAGACAGGCAACCTCATCCGACTGCACCTGTTTTCTACGACCTGGTGTTGATGTTTGTGTTCTCTCTTTCTCTAACAACATGGAGAATTTGGACATGCAAAGTCCACAGCCTGTGTGGATTGATGCTAAAATAAGCTCAATTAAACGGAGGCCTCATCAAGCTGGGTGTTCATGCCAGTTTTACGTCCAATTGTATGCTGATTCAAAACCCCTTGGTTCAGAGAAAGGATCACTCTGTAAAGAAATTGTAGAAATGGGAATCGATCAGATATCCATACTCCAAAGGGTTAGAAAGAACATCTGTGAAGGTCAATTCTACCGATGGGATTGCTCCGAGGACTCCTCTTTGTTGCCAAAAACCAAACTACTTTTGGGAAAATTTCTTTCCGACCTTTCGTGGTTAATAGTTACATCGGCATTGAAACATGTCACCTTTGATGTGATATCATTGGATAACAAGATCTTGTATCAAGTTTTAGAGATTAACCAAAAGAGCACATCAGTAACTTCTGACAAGATTTTACATACTGTAAACTTTAGAGATGATGATGGTAGGCTTATTCCAATAATACATCAGCTAGATACCTCTGATAACATTGAGATACTTCCTGGAGAGGATGCATTTGACAATCAACTTCGTTCCATTACTGATCCTGTGGACTTAAGGCGTTCAAAACGGCGTAATGTTCAACCTGTTCGTTTTCTTGGCTGTGATAGTATTGACGAATCAGAAATTGACTACAGTGGAACCAGGATATATAAAAATGACCAATTGAATGATGATGATGAGATGATATTACCACTCGCTTACCTGTTTGGGACGCCTGTAGGCTCTTCAAAACAGAAGATTGAAAATGAAAGCAACCACGATTCCAATAAATTGAGTGTACACGATGACCTCTCTGTTTTCAAGAGCAGAATAAAGTCTTTGGAAATGAAATCAGGAATGAGTGACGAATTAGAAGATAAAAATCAACTTGCCATAGTTCCTATACTTGATGAACAGCCAATAGCATCTGATCCATATCCTAATGTTGCCAACAGTTGCGGTAATTATACAAAACAGATAACTGAAATGTCATCCACGTATTATTACATTAATAACAAAAGCAAAATCCGAAAAAGAAAGTTTTCGGACTTTCAAGATGTGGACTTTGAGAATGATATTGATAGCTGTAGAGGAAAAGCTTCGAGTAGTAAAGGTAGGAGGCCCAGTTATCATTCCATAAGTTATAAAGAGAATGGTCATCCTAAAGAAAGACCATGGCAGAAAAGGTCCTTAAGTGCAGGTGCATACAAGGATTTGATTAATTCCTTCTTGAAGAATATTGATTCAACAATTAAAAAAGACGAGCCGCAAATAATTGATCAATGGAAAGAATTTAAGAACAAAAGCTGCTTGGATAAAAAGATCGAGATGGAAATGCCCTCTAATGAGAAAGAGGAAGAAAGCTCTGAGATTGAAATGTTGTGGAGAGAAATGGAAATATCCCTTGCCTCTAGTTACCTTATTGATGCCAATCAGGGCTTTAGTAATGGAACATCAATGGAGCCTGAACAGAAACCAAGCAAATGGTGCAAGCATGAGTTCAAATTGAATGAAGAGATTGGGATGCTCTGCCATATATGTGGTTTTGTGAGCACTGAAATTAAAGATGTATCAGCACCATTTATGCAACACATGGGCTGGAGTACAGAAGAGCGGCGGACTGAAGAAAAAGATCCAGAGCACAATAGCGACGAAGAGGAGGAGATGAATATTTTCTCTGGCCTTCCTTCTTCTGATGATACTTTATCAGAAGAAAATGATAATGTCTGGGCCTTGATCCCTGAATTCAGAAATAAATTACATCTCCACCAGAAAAAAGCATTCGAGTTCCTGTGGAAAAATGTTGCTGGTTCTATGGTTCCAGCTCTCATGGATCAAGCAACTCGTAAAATAGGTGGTTGTGTGATATCCCATACACCGGGAGCTGGAAAAACCTTTCTTATCATCTCGTTCCTTGTTAGTTACTTGAAACTTTTCCCAGGGAAAAGGCCCCTTGTCCTTGCTCCAAAGACAACTCTATATACGTGGTACAAGGAGTTCATTAAGTGGGAGGTTCCTGTGCCAATTCATCTAATACATGGTCGTAGAACCTACCGAGTTTTCCGGGCAAACTCAAAACCAGTGACCTTTGCAGGTCCAAGGCCTACAGATGATGTCATGCACATCTTGGATTGCCTGGAAAAGATAAAGAAGTGGCATGCACATCCAAGTGTTCTTGTTATGGGCTATACATCATTCCTTACATTAATGAGGGAAGATGCAAAGTTCGCACACAGAAAGTACATGGCCAAAGTTCTGCGCCAAAGTCCAGGTATCTTGATATTGGATGAGGGGCATAACCCCAGGAGTACCAAGTCCAGGCTGAGGAAAGTTTTGATGAAAGTTGAAACGGACCTTAGAATACTCCTCTCAGGGACATTGTTTCAAAATAATTTCTGTGAATATTTCAATACCCTTTGCTTGGCAAGACCCAAGTTTGTGAATGAAGTGTTGAAGAAACTAGATCCCAAATTCCAGAGGAAGAAAAAAAAAGCTCCACATTTGCAAGAAGCTCGGGCAAGGAAATTCTTTCTAGATAAGATAGCTCGAAAAATCGATGCAGGTGATGAAGAAGACAGGAGAGATGGTCTGAATATGTTAAGAAATATGACAGGTGGGTTTATTGATGTTTATGAAGGTGGCAGTAAGGATGGTCTTCCTGGTTTACAAATTTACACCTTACTAATGAACACAACTGACATTCAACAAGAAATTTTGAATAAACTTCACAAGATAATGGCTCAATTCCCTGGATACCCCCTTGAGTTAGAACTCCTCATAACGCTTGGTTCGATACATCCTTGGTTAGTAAAAACTGCAGTGTGTGCCAACAAATTTTTCACTGATAGAGAAATGATGGAGCTAGATAAATATAAATTTGATTTGAGGAAAGGATCAAAAGTGATGTTTGTTCTGAATCTTGTGTATCGTGTCGTCAAGAAGGAAAAAATTCTGATCTTCTGCCACAACATTGCACCCGTCAGACTATTTGTCGAGCTGTTTGAGAATGTGTTTAGGTGGAAGAGAGGCCGTGAAATCTTGGCCCTCACAGGAGACCTCGAGCTGTTTGAACGAGGAAAAGTGATGGATAAGTTTGAAGATCCAGTGGGGCCATCCAAAGTTCTTCTTGCTTCAATCACTGCTTGTGCAGAAGGCATAAGTTTGACAGCAGCTTCACGAGTCATCCTACTAGACTCGGAGTGGAATCCTTCGAAGACAAAGCAGGCCATCGCTCGAGCTTTTCGTCCTGGCCAGCTTAAAGTGGTTTATGTCTATCAACTACTAGTAACTGGCACACTGGAAGAAGACAAGTACAAGAGAACTACATGGAAGGAATGGGTGTCGAGTATGATTTTCAGCGAGGCATTTGTGGAGGATCCTTCTAAATGGCAAGCAGAGAAGATTGAAGATGAAGTTTTGAGAGAGATGGTGGAGGAAGATAGAGTGAAATCATTTCATATGATTATGAAAAACGAGAAGGCTTCTACTGTGATCAGGGAATTAAAGGATTAG	3795	40.13	MVKTKRRVYEFKHPFNDYPFEAMCCGSWQAVEKIRIRNGLITLHLVNDQFMVLERGPYSDFRVRSRQATSSDCTCFLRPGVDVCVLSFSNNMENLDMQSPQPVWIDAKISSIKRRPHQAGCSCQFYVQLYADSKPLGSEKGSLCKEIVEMGIDQISILQRVRKNICEGQFYRWDCSEDSSLLPKTKLLLGKFLSDLSWLIVTSALKHVTFDVISLDNKILYQVLEINQKSTSVTSDKILHTVNFRDDDGRLIPIIHQLDTSDNIEILPGEDAFDNQLRSITDPVDLRRSKRRNVQPVRFLGCDSIDESEIDYSGTRIYKNDQLNDDDEMILPLAYLFGTPVGSSKQKIENESNHDSNKLSVHDDLSVFKSRIKSLEMKSGMSDELEDKNQLAIVPILDEQPIASDPYPNVANSCGNYTKQITEMSSTYYYINNKSKIRKRKFSDFQDVDFENDIDSCRGKASSSKGRRPSYHSISYKENGHPKERPWQKRSLSAGAYKDLINSFLKNIDSTIKKDEPQIIDQWKEFKNKSCLDKKIEMEMPSNEKEEESSEIEMLWREMEISLASSYLIDANQGFSNGTSMEPEQKPSKWCKHEFKLNEEIGMLCHICGFVSTEIKDVSAPFMQHMGWSTEERRTEEKDPEHNSDEEEEMNIFSGLPSSDDTLSEENDNVWALIPEFRNKLHLHQKKAFEFLWKNVAGSMVPALMDQATRKIGGCVISHTPGAGKTFLIISFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEVPVPIHLIHGRRTYRVFRANSKPVTFAGPRPTDDVMHILDCLEKIKKWHAHPSVLVMGYTSFLTLMREDAKFAHRKYMAKVLRQSPGILILDEGHNPRSTKSRLRKVLMKVETDLRILLSGTLFQNNFCEYFNTLCLARPKFVNEVLKKLDPKFQRKKKKAPHLQEARARKFFLDKIARKIDAGDEEDRRDGLNMLRNMTGGFIDVYEGGSKDGLPGLQIYTLLMNTTDIQQEILNKLHKIMAQFPGYPLELELLITLGSIHPWLVKTAVCANKFFTDREMMELDKYKFDLRKGSKVMFVLNLVYRVVKKEKILIFCHNIAPVRLFVELFENVFRWKRGREILALTGDLELFERGKVMDKFEDPVGPSKVLLASITACAEGISLTAASRVILLDSEWNPSKTKQAIARAFRPGQLKVVYVYQLLVTGTLEEDKYKRTTWKEWVSSMIFSEAFVEDPSKWQAEKIEDEVLREMVEEDRVKSFHMIMKNEKASTVIRELKD*	1265

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
5	6559203	6566671	-	CsaV3_5G010570.1	Csa05g00859	529246

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Csa05g00859	1264	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	1065	1249	IPR001650	-
	Csa05g00859	1264	PANTHER	SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2	19	1257	-	-
	Csa05g00859	1264	SMART	helicmild6	1093	1178	IPR001650	-
	Csa05g00859	1264	CDD	SF2_C_SNF	1060	1189	-	-
	Csa05g00859	1264	MobiDBLite	consensus disorder prediction	456	488	-	-
	Csa05g00859	1264	SMART	ultradead3	677	921	IPR014001	-
	Csa05g00859	1264	Gene3D	-	657	945	IPR038718	-
	Csa05g00859	1264	MobiDBLite	consensus disorder prediction	471	488	-	-
	Csa05g00859	1264	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	706	906	IPR014001	-
	Csa05g00859	1264	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	979	1240	IPR027417	-
	Csa05g00859	1264	CDD	DEXHc_ATRX-like	681	945	-	-
	Csa05g00859	1264	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	637	908	IPR027417	-
	Csa05g00859	1264	MobiDBLite	consensus disorder prediction	629	648	-	-
	Csa05g00859	1264	Pfam	Helicase conserved C-terminal domain	1061	1177	IPR001650	-
	Csa05g00859	1264	Gene3D	-	1033	1253	IPR027417	-
	Csa05g00859	1264	Pfam	SNF2-related domain	680	930	IPR000330	GO:0005524\|GO:0140658
	Csa05g00859	1264	PANTHER	SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED	19	1257	IPR044567	GO:0080188

Event-related genes

Select	Gene_1	Gene_2	Event_name
	Csa05g00859	Csa06g00201	CCT

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Csa03g04668	Csa-Chr3:40605454	Csa05g00859	Csa-Chr5:6559203	1.24E-103	dispersed
	Csa05g00859	Csa-Chr5:6559203	Csa02g00781	Csa-Chr2:6544754	1.87E-19	dispersed

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	31716	PF00176	SNF2_N	3.80E-17	CL0023	Csa	TR

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Csa05g00859	K10875		-	csv:101215377	2524.58