Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00861 ATGGCAGCAGAAGATCTTCCAGAAGCAAGAGCAGCCCTCAGCCTCCTCCGCAGTAGACTCTGCAACTCTAGTTTCTATTTCAAACCTCCATCGGATTCTTCTGATAGCAATTACAGTAAATTGAAGTTCATAATATCCAGTTCGGTGACTGAGGCGTGTAATAATTCAATCCTGCTTCTCGGCCCCAGGGGTTCGGGGAAAATGGCGGTGCTGGAACTTGTTCTACAAGATCTATTACTAGAATATCCGGATATGATTACCGTGATAAGGTTGAGTGGTCTTTTGCATTGTGATGACAATGGCGCCTTCAAGGAGATTGCTAGGCAGCTTTGTTCAGAGTATCAATTATTATTCTCAAAAATGGCATCATTCGACGACAATTCCCAGTTTATGGTAGCTATGCTACGGGAGTGTGGCTTGGCACATAAGACAATTGTTTTTGTACTCGATGAATTTGATCTTTTTGCACAAGGAAAACAACGGTTACTTTATAGTTTGTTAGATGCCATGCAATCAGTATCATCACAAGCTATTGTTATTGGCATCAGTTGTCGATTGGATGCTGATCAGCTACTCGAGAAAAGAGTAAGATCTCGGTTCTCCCATAGAAAGCTGTTATTTCTTCCTCCCTGCAAGGAAAATGTTGAGAGATTGCTGGAGCACATTTTATCATTGCCAATAGACTCAGACCTTCCTCACGACTATATTATCAAATTTAATGCAAAGCTTCATAACATGTTAGCAAATGAGAGATTTAAGAAGGTCATTAGCACTTATTTGGACTCTGATTCGACCGTCAAACAATTTGTGAGATATCTGTTTTGTGCCATATCAAAGTTGAACTTGAAATCTGGGTTGCTGACCGTTGAAAATTTTGAACATGCTCTTTCCGATACTCAGAGGCAGCCAAAGCAGGAATATATAAAAGATTGTTCCATATTGGAGCTCTATATTCTGGTATGTATGAAAAGGTTGGAAGTTAAGGAGCAGAATTCGTATAACTTCAATTCTGTAATGAAAGAGTACAAGAGTATACATGATTCATTCCGGACATCTGATTATTATTCACGAAGTGTATGCTTACGGGCTTTTGAGCACCTTCTACAGCGTGAATTAATCTGTTTCGCTGACAACCGTGGACATAATCAATCAATTGAATTTCGACCAGCCAAGCTGTTAATAACAGCTCATGAACTACACCATGGACTGAAGGCATATCGTTCATGTCCTAGCATCCTTCAGAAATTAATGAATTAA 1257 39.7 MAAEDLPEARAALSLLRSRLCNSSFYFKPPSDSSDSNYSKLKFIISSSVTEACNNSILLLGPRGSGKMAVLELVLQDLLLEYPDMITVIRLSGLLHCDDNGAFKEIARQLCSEYQLLFSKMASFDDNSQFMVAMLRECGLAHKTIVFVLDEFDLFAQGKQRLLYSLLDAMQSVSSQAIVIGISCRLDADQLLEKRVRSRFSHRKLLFLPPCKENVERLLEHILSLPIDSDLPHDYIIKFNAKLHNMLANERFKKVISTYLDSDSTVKQFVRYLFCAISKLNLKSGLLTVENFEHALSDTQRQPKQEYIKDCSILELYILVCMKRLEVKEQNSYNFNSVMKEYKSIHDSFRTSDYYSRSVCLRAFEHLLQRELICFADNRGHNQSIEFRPAKLLITAHELHHGLKAYRSCPSILQKLMN* 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6584271 6589990 + CsaV3_5G010590.1 Csa05g00861 529248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00861 418 PIRSF ORC4 4 418 IPR016527 GO:0000808|GO:0003677|GO:0005634|GO:0006260
Csa05g00861 418 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 4 10 417 IPR016527 GO:0000808|GO:0003677|GO:0005634|GO:0006260
Csa05g00861 418 Pfam Origin recognition complex (ORC) subunit 4 C-terminus 218 401 IPR032705 -
Csa05g00861 418 Gene3D - 34 209 IPR027417 -
Csa05g00861 418 Pfam AAA ATPase domain 39 174 IPR041664 -
Csa05g00861 418 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 258 IPR027417 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00861 K02606 - csv:101220845 810.061