Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00862 ATGGGTAAAACTCAAACTCCATTTGATTTCAACTCTTTTTCGAGATACCCATTTGGGGATTTTGGGGTTTTCTTTACCCTGTGTCTTGATGTGCTCTGTTTTTCACCTAAGAAGAAGGAGAAATGGAAGAATCTGAGACAAAACCCTAACGTGTTTGTTTTGTTGCTTTTGTTGCTTAATTTGGTTCCTGTTCTGAGTCAGGATTGGGATGGTGTGGTTGTGACTCAAGCTGATTTCCAATCCCTTCAGGCATTTAAGCAAGAGCTTGATGATCCCAAAGGGTTTTTGAAGAGTTGGAATGATAGTGGATTTGGGGCTTGTTCTGGTGGTTGGGCTGGGATTAAATGTGCCAAGGGACAAGTTATTGTAATACAGCTTCCATGGAAGGGATTAGGAGGTAGAATCACTGAGAAGATTGGCCAACTTCAAGCACTTAGGAAGCTTAGTTTACATGATAACTCTATTGGTGGATCAATCCCTTCTTCATTGGGGCTTCTTCCAAATCTTAGAGGGGTTCAGTTATTCAATAATCGACTTTCGGGTTCGATTCCGGCTTCATTGGGACTTTGTCCCGTACTTCAAACACTTCACATTAGTAACAATTTGCTCACTGGAACAATACCACCTACTTTGGCTAACTCCACCAAGCTTTATTGGCTTAACTTGAGCTTGAACTCGCTTTCGGGTCCGATTCCAACTACTCTTACTCGTTCGGTGTCCCTTACTTTCCTTGACCTTCAACATAACAATCTCTCAGGCAGCATTCCAGACTCTTGGGGTGGTGACGAGCAAAACCGTGTGTTTCAGCTCAAGTCTCTGACTCTTGATGGCAATCTCCTCTCAGGTACCATACCAACTTCTTTAAGTAAGTTAAGTGAGCTTCAAGTGATTTCCCTTAGCCACAATAGGTTAAATGGTGGCATTCCTGAAGAAATTAGTAGGCTTTCTCTGCTCAAAACATTGGATGTTTCTAATAATTTCCTTAATGGAAGTATGCCCCAAAGTTTTGATAGATTGAGAAACCTCTCTATACTCAACTTGAGTAGAAACAGATTCAATGGTCAAATTCCTGAAACTTTAGGGAACGTTTCAACACTTAAACAACTTGATTTATCTCAGAACAATCTAAGTGGAGAAATTCCAGCTTCCCTTGCTGATTTGCAAGGTCTTCAATCCTTAAATGTCTCATACAACAACCTTTCGGGTTCGGTTCCTCGAGCTCTCGCTGAAAAATTCAATGCAAGTTCCTTTGTTGGGAACCTTCAGCTCTGTGGGTTCAGTGGTTCAATTCTGTGCCCGTCCCCAGCCCCTTCTCAAGAAGCTCCTGCTCCTCCACCAGAAAGTTCGACAACCCGACATCGGAAGTTAAGTACTAAAGATATAATCCTCATAGCAGCAGGAGCCCTCCTTCTGGTATTGGTTATAGTTTTCTTTATATTGCTCTGCTGCTTGATAAGGAAAAGGGCTGCTTCAAAAGGGAAGGATGGTGGTGAAGCTGGAGCAGCTGGGGCTGCGAGGGCCGAGAAGGGCGTCCCCCCGACTAGCAGTGAAGTTGAAGCGGCTGGAGGTGGGGATGCTGGTGGGAAGCTCGTCCATTTCGACGGGCAAACGGTCTTCACAGCAGATGATCTTTTGTGTGCAACAGCAGAAATAATGGGAAAGAGTACTTATGGGACTGTTTACAAGGCCACGTTGGAGGATGGAAATCAAGTTGCGGTGAAGAGATTGAGAGAGAAAATCACTAAAAGCCAAAAGGAATTTGAAGCAGAGGTCAACATACTTGGCAAGATCAGACATCCAAATCTATTAGCTTTAAGAGCTTATTACTTGGGACCCAAAGGAGAGAAGCTTCTCGTTTTCGATTATATGCCGAATGGAAGTCTCGCGACGTTCCTGCATGCTCGTGGACCGGACACGTCCATCGATTGGCCAACAAGGATGAAGATAGCTCAGGGTATGACACGTGGCCTGTGTCACCTTCACACGCACGAGAACAGCATCCATGGAAACCTGACATCAAGCAACATTCTACTAGATGAGTACATAAACGCTAAGATTGCAGATTTTGGCTTGTCAAGGTTGATGACAGCAGCTGCAAGCTCAAATGTAATAGCAACAGCCGGGGCACTTGGGTACCGAGCACCAGAACTCTCAAAGTTGAAGAAAGCAAACACAAAAACCGATATTTACAGCCTTGGAGTCATCATATTGGAACTCTTGACTGGTAAGTCCCCCGGTGAAGCCATGAACGGAGTTGATTTACCTCAATGGGTCGCATCGATAGTCAAAGAGGAGTGGACTAATGAAGTTTTTGATTTGGAACTGATGAGAGATGCATCTACCATTGGAGATGAGTTACTAAACACTCTGAAACTCGCTTTGCATTGTGTCGACCCTTCACCGTCAGCGAGACCGGAAGTTCAACAAGTTTTGCAACAACTGGAAGAGATAAGGCCAGAAACTGCTCCAAGTTCTGGGGATGATGGAATAGGAATAGGAGGAGGAGGAGGAGGAGCCCCTTCAACAAGTGAGTGA 2535 44.5 MGKTQTPFDFNSFSRYPFGDFGVFFTLCLDVLCFSPKKKEKWKNLRQNPNVFVLLLLLLNLVPVLSQDWDGVVVTQADFQSLQAFKQELDDPKGFLKSWNDSGFGACSGGWAGIKCAKGQVIVIQLPWKGLGGRITEKIGQLQALRKLSLHDNSIGGSIPSSLGLLPNLRGVQLFNNRLSGSIPASLGLCPVLQTLHISNNLLTGTIPPTLANSTKLYWLNLSLNSLSGPIPTTLTRSVSLTFLDLQHNNLSGSIPDSWGGDEQNRVFQLKSLTLDGNLLSGTIPTSLSKLSELQVISLSHNRLNGGIPEEISRLSLLKTLDVSNNFLNGSMPQSFDRLRNLSILNLSRNRFNGQIPETLGNVSTLKQLDLSQNNLSGEIPASLADLQGLQSLNVSYNNLSGSVPRALAEKFNASSFVGNLQLCGFSGSILCPSPAPSQEAPAPPPESSTTRHRKLSTKDIILIAAGALLLVLVIVFFILLCCLIRKRAASKGKDGGEAGAAGAARAEKGVPPTSSEVEAAGGGDAGGKLVHFDGQTVFTADDLLCATAEIMGKSTYGTVYKATLEDGNQVAVKRLREKITKSQKEFEAEVNILGKIRHPNLLALRAYYLGPKGEKLLVFDYMPNGSLATFLHARGPDTSIDWPTRMKIAQGMTRGLCHLHTHENSIHGNLTSSNILLDEYINAKIADFGLSRLMTAAASSNVIATAGALGYRAPELSKLKKANTKTDIYSLGVIILELLTGKSPGEAMNGVDLPQWVASIVKEEWTNEVFDLELMRDASTIGDELLNTLKLALHCVDPSPSARPEVQQVLQQLEEIRPETAPSSGDDGIGIGGGGGGAPSTSE* 845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6592954 6601046 - CsaV3_5G010600.1 Csa05g00862 529249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00862 844 Gene3D Phosphorylase Kinase; domain 1 552 623 - -
Csa05g00862 844 MobiDBLite consensus disorder prediction 493 521 - -
Csa05g00862 844 Pfam Leucine rich repeat 269 326 IPR001611 GO:0005515
Csa05g00862 844 Pfam Leucine rich repeat 340 400 IPR001611 GO:0005515
Csa05g00862 844 Pfam Leucine rich repeat 192 251 IPR001611 GO:0005515
Csa05g00862 844 Gene3D Ribonuclease Inhibitor 235 307 IPR032675 -
Csa05g00862 844 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 337 822 - -
Csa05g00862 844 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 19 339 - -
Csa05g00862 844 SUPERFAMILY L domain-like 115 408 - -
Csa05g00862 844 SUPERFAMILY Protein kinase-like (PK-like) 550 818 IPR011009 -
Csa05g00862 844 Pfam Leucine rich repeat N-terminal domain 77 116 IPR013210 -
Csa05g00862 844 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 19 339 - -
Csa05g00862 844 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 337 822 - -
Csa05g00862 844 Gene3D Transferase(Phosphotransferase) domain 1 624 827 - -
Csa05g00862 844 MobiDBLite consensus disorder prediction 817 844 - -
Csa05g00862 844 SMART LRR_typ_2 142 166 IPR003591 -
Csa05g00862 844 SMART LRR_typ_2 339 363 IPR003591 -
Csa05g00862 844 SMART LRR_typ_2 315 338 IPR003591 -
Csa05g00862 844 SMART LRR_typ_2 387 410 IPR003591 -
Csa05g00862 844 SMART LRR_typ_2 291 314 IPR003591 -
Csa05g00862 844 SMART LRR_typ_2 239 262 IPR003591 -
Csa05g00862 844 Gene3D Ribonuclease Inhibitor 75 234 IPR032675 -
Csa05g00862 844 Gene3D Ribonuclease Inhibitor 308 433 IPR032675 -
Csa05g00862 844 ProSiteProfiles Protein kinase domain profile. 546 817 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g00862 844 CDD STKc_IRAK 552 817 - -
Csa05g00862 844 Pfam Protein tyrosine and serine/threonine kinase 549 814 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03036 Csa-Chr3:28729553 Csa05g00862 Csa-Chr5:6592954 0 dispersed
Csa05g00862 Csa-Chr5:6592954 Csa06g01121 Csa-Chr6:9313912 6.64E-20 dispersed
Csa05g02641 Csa-Chr5:27467713 Csa05g00862 Csa-Chr5:6592954 3.68E-96 dispersed
Csa07g01484 Csa-Chr7:15185546 Csa05g00862 Csa-Chr5:6592954 3.92E-17 dispersed
Csa07g01755 Csa-Chr7:17937824 Csa05g00862 Csa-Chr5:6592954 3.40E-36 dispersed
Csa05g00862 Csa-Chr5:6592954 Csa01g02093 Csa-Chr1:18117705 5.24E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78229 PF07714 PK_Tyr_Ser-Thr 9.40E-41 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00862 - - csv:101214895 1502.26