Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa05g00878 | ATGGGAGCTGCTAATCTCCCTTGTTTTTCATCGCTTTTTGGAGTTTTTCCACTTCAAAACAATGCTCCCAACAAATTTTTACCATTTTCTTCAATTCTTTCAAAACCCCTTTACCGATTCAACAGGATTTGCTGCGGAGTGCCTGAGAGTGGAATTCAGCAAAACCCATCAACTTCCAGACCTTCCTCTTCCAAGAACAGGATGGAAGACTACAATTTAGCTATGAAGAAGATGATGAGGAACCCCTATGAGTATCACCATGAACTGGGGATGAATTATACTGTGATAGCTGACAATTTGATTGTCGGTTCCCAGCCTCAAAAACCTGAAGATATCAATTTCTTGAAAGAGGAAGAAGGTGTTGCCTATATTCTGAATTTACAGCAGGACAAGGATGTTGAGTACTGGGGAATCGACTTACAATCAATTATAGAAAGATGTAAAGAACTTGGAATTCATCATATGAGGCAGCCGGCAAAAGATTTCGATCCTGATTCCCTGAGAACTGGATTGCCTAAAGCTGTTTCCTTGTTAGAATGGGCAATTTCAAAGGGCAAAGGAAAAGTATATGTGCATTGCACTGCTGGACTTGGAAGAGCCCCGGCAGTTGCAATAGCCTACTTGTATTGGTTTTGCGGAATGAATTTGAATACAGCATATGAAGCACTGACTTCTAAAAGACCTTGTGGACCAAGTAAAAGAGCGATCCGTGGAGCGACATATGATCTATCTAAAAATGATCCATGGAAGGAGCCATTTGAGAGCCTTCCAGATAATGCATTCGAGGATATTGCAGATTGGGAAAGAAACTTGATTCGGGATCGGGTTCGTGCTCTCCGTAGAACTTGA | 849 | 41.58 | MGAANLPCFSSLFGVFPLQNNAPNKFLPFSSILSKPLYRFNRICCGVPESGIQQNPSTSRPSSSKNRMEDYNLAMKKMMRNPYEYHHELGMNYTVIADNLIVGSQPQKPEDINFLKEEEGVAYILNLQQDKDVEYWGIDLQSIIERCKELGIHHMRQPAKDFDPDSLRTGLPKAVSLLEWAISKGKGKVYVHCTAGLGRAPAVAIAYLYWFCGMNLNTAYEALTSKRPCGPSKRAIRGATYDLSKNDPWKEPFESLPDNAFEDIADWERNLIRDRVRALRRT* | 283 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 6703560 | 6710011 | - | CsaV3_5G010760.1 | Csa05g00878 | 529265 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa05g00878 | 282 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 84 | 232 | IPR029021 | - | |
Csa05g00878 | 282 | Gene3D | Protein tyrosine phosphatase superfamily | 75 | 282 | IPR029021 | - | |
Csa05g00878 | 282 | Pfam | Dual specificity phosphatase, catalytic domain | 115 | 229 | IPR000340 | GO:0008138|GO:0016311 | |
Csa05g00878 | 282 | PANTHER | DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN | 29 | 281 | - | - | |
Csa05g00878 | 282 | PANTHER | PHOSPHOGLUCAN PHOSPHATASE LSF2, CHLOROPLASTIC | 29 | 281 | - | - | |
Csa05g00878 | 282 | SMART | dsp_5 | 92 | 246 | IPR020422 | GO:0006470|GO:0008138 | |
Csa05g00878 | 282 | CDD | DSP_laforin-like | 91 | 238 | IPR045204 | GO:0019203|GO:0046838 | |
Csa05g00878 | 282 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 169 | 228 | IPR000387 | GO:0016311|GO:0016791 | |
Csa05g00878 | 282 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 92 | 249 | IPR020422 | GO:0006470|GO:0008138 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g00252 | Csa-Chr3:2015872 | Csa05g00878 | Csa-Chr5:6703560 | 3.38E-06 | dispersed | |
Csa05g00878 | Csa-Chr5:6703560 | Csa05g02758 | Csa-Chr5:28304180 | 7.63E-47 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa05g00878 | - | - | csv:101219662 | 587.8 |