Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00878 ATGGGAGCTGCTAATCTCCCTTGTTTTTCATCGCTTTTTGGAGTTTTTCCACTTCAAAACAATGCTCCCAACAAATTTTTACCATTTTCTTCAATTCTTTCAAAACCCCTTTACCGATTCAACAGGATTTGCTGCGGAGTGCCTGAGAGTGGAATTCAGCAAAACCCATCAACTTCCAGACCTTCCTCTTCCAAGAACAGGATGGAAGACTACAATTTAGCTATGAAGAAGATGATGAGGAACCCCTATGAGTATCACCATGAACTGGGGATGAATTATACTGTGATAGCTGACAATTTGATTGTCGGTTCCCAGCCTCAAAAACCTGAAGATATCAATTTCTTGAAAGAGGAAGAAGGTGTTGCCTATATTCTGAATTTACAGCAGGACAAGGATGTTGAGTACTGGGGAATCGACTTACAATCAATTATAGAAAGATGTAAAGAACTTGGAATTCATCATATGAGGCAGCCGGCAAAAGATTTCGATCCTGATTCCCTGAGAACTGGATTGCCTAAAGCTGTTTCCTTGTTAGAATGGGCAATTTCAAAGGGCAAAGGAAAAGTATATGTGCATTGCACTGCTGGACTTGGAAGAGCCCCGGCAGTTGCAATAGCCTACTTGTATTGGTTTTGCGGAATGAATTTGAATACAGCATATGAAGCACTGACTTCTAAAAGACCTTGTGGACCAAGTAAAAGAGCGATCCGTGGAGCGACATATGATCTATCTAAAAATGATCCATGGAAGGAGCCATTTGAGAGCCTTCCAGATAATGCATTCGAGGATATTGCAGATTGGGAAAGAAACTTGATTCGGGATCGGGTTCGTGCTCTCCGTAGAACTTGA 849 41.58 MGAANLPCFSSLFGVFPLQNNAPNKFLPFSSILSKPLYRFNRICCGVPESGIQQNPSTSRPSSSKNRMEDYNLAMKKMMRNPYEYHHELGMNYTVIADNLIVGSQPQKPEDINFLKEEEGVAYILNLQQDKDVEYWGIDLQSIIERCKELGIHHMRQPAKDFDPDSLRTGLPKAVSLLEWAISKGKGKVYVHCTAGLGRAPAVAIAYLYWFCGMNLNTAYEALTSKRPCGPSKRAIRGATYDLSKNDPWKEPFESLPDNAFEDIADWERNLIRDRVRALRRT* 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6703560 6710011 - CsaV3_5G010760.1 Csa05g00878 529265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00878 282 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 84 232 IPR029021 -
Csa05g00878 282 Gene3D Protein tyrosine phosphatase superfamily 75 282 IPR029021 -
Csa05g00878 282 Pfam Dual specificity phosphatase, catalytic domain 115 229 IPR000340 GO:0008138|GO:0016311
Csa05g00878 282 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 29 281 - -
Csa05g00878 282 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF2, CHLOROPLASTIC 29 281 - -
Csa05g00878 282 SMART dsp_5 92 246 IPR020422 GO:0006470|GO:0008138
Csa05g00878 282 CDD DSP_laforin-like 91 238 IPR045204 GO:0019203|GO:0046838
Csa05g00878 282 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 169 228 IPR000387 GO:0016311|GO:0016791
Csa05g00878 282 ProSiteProfiles Dual specificity protein phosphatase domain profile. 92 249 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00252 Csa-Chr3:2015872 Csa05g00878 Csa-Chr5:6703560 3.38E-06 dispersed
Csa05g00878 Csa-Chr5:6703560 Csa05g02758 Csa-Chr5:28304180 7.63E-47 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00878 - - csv:101219662 587.8