Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00883 ATGTCCAAAGAAAGAGAGAGATTCGATGAGATAGCGAAGAAGATAAAGAGAGAGACAGATGTATCATCAAATATTCCTCCACAACAAATTATGGGGAGAAGACACTCATTGCAGGGTCCTCCTGGAGCTCTCAACACCATTACTCCATGCGCAGCCTGCAAACTTTTAAGACGAAGATGTGCTCAAGAGTGTCCCTTCTCCCCATACTTCTCTCCCCATGAGCCTCATAAATTTGCCTCAGTCCACAAGGTTTTTGGCGCAAGCAACGTCTCGAAGATGCTCATGGAAGTTTCCGACAATCAAAGAGCGGATGCCGCAAACAGCTTAGTTTATGAAGCTAATGTGAGGTTAAGAGATCCTGTTTATGGTTGTATGGGTGCCATTTCAGCCCTACAACACCAGATTCAATCCTTACAAGCTGAGCTCAATGCTGTGAGAGCTGAGATCTTAAGACACAAATTTAGAGAAGCTAATAATATCATTCACTCTTCTCCTCAACAACAACATGTGCCTTTTCTTTCTTCTTCTTCTACGGTGGTTGTTTCGGTTGCCCTGCCACCACCGCCTCCGCCTCCACCGCTACCTCCGCCGCATCATCATGATGCTTCTTCTTCTTCTTCCTCTTTGTACAATCGACGGACGGTGGCAGCTGCGGCTGATTATAGTACTATTTCAAGTAATGAAAATGTTACCTACTTTGTTGGTACTTCTAGTACTGGTCATCAATTGAATTCTTAG 738 44.44 MSKERERFDEIAKKIKRETDVSSNIPPQQIMGRRHSLQGPPGALNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVSDNQRADAANSLVYEANVRLRDPVYGCMGAISALQHQIQSLQAELNAVRAEILRHKFREANNIIHSSPQQQHVPFLSSSSTVVVSVALPPPPPPPPLPPPHHHDASSSSSSLYNRRTVAAAADYSTISSNENVTYFVGTSSTGHQLNS* 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6752730 6754974 + CsaV3_5G010810.1 Csa05g00883 529270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00883 245 MobiDBLite consensus disorder prediction 184 209 - -
Csa05g00883 245 Pfam Lateral organ boundaries (LOB) domain 49 146 IPR004883 -
Csa05g00883 245 PANTHER LOB DOMAIN PROTEIN 34 233 - -
Csa05g00883 245 MobiDBLite consensus disorder prediction 184 199 - -
Csa05g00883 245 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 34 233 - -
Csa05g00883 245 Coils Coil 128 155 - -
Csa05g00883 245 ProSiteProfiles LOB domain profile. 48 149 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00883 Csa-Chr5:6752730 Csa06g01169 Csa-Chr6:9817253 4.08E-51 dispersed
Csa06g01663 Csa-Chr6:14608411 Csa05g00883 Csa-Chr5:6752730 4.69E-43 dispersed
Csa05g02960 Csa-Chr5:29931622 Csa05g00883 Csa-Chr5:6752730 2.55E-29 transposed
Csa05g00883 Csa-Chr5:6752730 Csa06g00218 Csa-Chr6:1497292 3.17E-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31717 PF03195 LOB 2.20E-40 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00883 - - csv:101219425 411.764