Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00886 ATGGATCTTGAGCCTGGGAAGTGTTGGGATAGTTCAAAGAAGGATTCTTGGAAAACAGTTCTTGTATTGGCCTATCAAAGCCTTGGTGTTGTCTATGGCGATTTGAGCATCTCTCCTCTTTACGTTTATAGAAGCACTTTTGCTGAAGACATCCAACATTCAGATACTAACGAAGAAATCTATGGTGTTCTTTCATTTGTCTTCTGGACTCTCACTATAGTCCCTCTTTTCAAATACGTTTTTGTAGTTCTTAGAGCTGATGACAATGGTGAAGGTGGAACTTTTGCTCTGTACTCTTTAATTTGTAGACATGCCAAAGTAAGCCTTCTCCCCAATAGACAAGTTGCTGATGAAGCTCTTTCAACTTACTTGCTGGAACATTCACCAGAGAAGAAGAAGCAATCTAAGGTTAAATTGCTACTAGAGAAGCACAGGGCTCTTCACACTGCCTTGTTGATTCTTGTTCTTCTAGGGACTTGTATGGTGATTGGAGATGGTCTTCTCACTCCTGCCATTTCTGTTTTCTCAGCAGTTTCTGGACTTGAGTTATCCATGACCAAGGCTCACCATCAGTATGCAGTGGTTCCGATCACTTGCTTTATCTTGGTTTGTCTATTTGCACTTCAACACTACGGCACACATCGAGTCGGCTTTGTATTTGCCCCCATTGTATTGGCATGGCTACTCTGCATCAGTACCCTTGGCATATACAATATTATACACTGGAATCCACATGTTTATGAGGCTCTTTCTCCATATTACATGTTCAAGTTTTTGGAGAAGACAAGGAAGAGTGGTTGGATGTCGTTGGGGGGCATATTGCTATGCATAACAGGCTCAGAAGCAATGTTTGCTGATCTTGGTCACTTCTCATACACTGCAATACAGATTGCTTTCACTTTTTTGGTGTATCCAGCGCTTATATTGGCATACATGGGCCAAGCTGCTTACTTATCACAACATCACCATACCACCAAAAGCATTGGCTTCTACGTTTCTGTTCCAGAAAGTGTGAGATGGCCAGTGCTTACAATTGCTATACTTGCATCGGTTGTTGGAAGCCAAGCAATCATCAGTGGAACATTCTCCATTATTAACCAGAGCCAATCACTTGGGTGCTTCCCTCGAGTGAAGGTTGTTCATACATCTGATAAGATCCATGGCCAGATCTACATTCCAGAGATAAATTGGATCCTTATGATTCTCTGCGTAGCCGTTACGATTGGATTTAGAGACATAAAACATCTTGGAAATGCATCAGGTCTGGCTGTAATGACTGTGATGCTTGTAACAACATGTCTTACATCTTTGGTGATTGTTCTTTGTTGGAACAAATCTCCACTTTTGGCTCTCGCTTTTTTGATCTTCTTTGGGTCTGTTGAATTGCTTTATTTCTCAGCTTCATTGACCAAGTTCAGAGAAGGCGCTTGGCTCCCCATTCTTTTAGCTCTCTTCCTCATGACCATCATGTTTGTTTGGCACTATGCAACCATCAAGAAGTATGAATTTGATCTTCACAACAAGGTTTCATTAGAATGGTTGCTAGCATTGGGGCCAAGCCTTGGGATTGCTCGTGTCCCTGGCATAGGATTAGTCTTCACCGATCTCACCTCTGGCATCCCTGCCAACTTCTCCCGCTTTGTTACCAACCTCCCTGCATTTCATCGGATTCTCGTCTTTGTATGTATAAAGTCAGTACCAGTTCCTTTTGTACCTCCTGCTGAGCGATATCTCGTGGGAAGAGTTGGCCCAGCTACGCATCGATCGTACAGGTGCATTGTTCGGTATGGCTACCGTGATGTTCACCAGGATGTGGACTCATTTGAATCAGAATTAATCAAGAAACTTGCGGACTTCATCCGCTATGATTGGTTCAGAAAGCAAAGAGGCAACTCTTGCAGTGAGGATGAAGCATCCCGTTCAAATGAATCGACAAGTGAATGCAGGCTGGCTGTGATTGGAACCATAGCATTCGCGGGTGCAACTGCTTATGAGGAGACTGTGCAGCCTGCAAGCGTATCAGTCGGGTTCCAAACTGTCGACAGCATCGCTGATGTGATTGAAATGGAGCCACTGGGAGAAGAAAGAAGAGTCAGATTTGCCATAGATGACGAATTTGAGGGTGGCTCACAAGCTGAAACAGAAGTCCTTCTGCAAGAAGAGCTAGAAGATCTTATAGCAGCGCAGCAATCCGGGACAGCATTCATTCTCGGGCATTCACACGTCCGTGCAAAGCAAGGATCGTCTCTGTTGAAGAGGCTGGCCATTAACTATGGCTACAACTTCCTGAGAAGGAATTGTAGGGGAGCAGATGTTGCTCTTAAGGTGCCACCAGTGTCTCTTCTTGAAGTTGGCATGGTTTATGTTGTATAA 2373 43.91 MDLEPGKCWDSSKKDSWKTVLVLAYQSLGVVYGDLSISPLYVYRSTFAEDIQHSDTNEEIYGVLSFVFWTLTIVPLFKYVFVVLRADDNGEGGTFALYSLICRHAKVSLLPNRQVADEALSTYLLEHSPEKKKQSKVKLLLEKHRALHTALLILVLLGTCMVIGDGLLTPAISVFSAVSGLELSMTKAHHQYAVVPITCFILVCLFALQHYGTHRVGFVFAPIVLAWLLCISTLGIYNIIHWNPHVYEALSPYYMFKFLEKTRKSGWMSLGGILLCITGSEAMFADLGHFSYTAIQIAFTFLVYPALILAYMGQAAYLSQHHHTTKSIGFYVSVPESVRWPVLTIAILASVVGSQAIISGTFSIINQSQSLGCFPRVKVVHTSDKIHGQIYIPEINWILMILCVAVTIGFRDIKHLGNASGLAVMTVMLVTTCLTSLVIVLCWNKSPLLALAFLIFFGSVELLYFSASLTKFREGAWLPILLALFLMTIMFVWHYATIKKYEFDLHNKVSLEWLLALGPSLGIARVPGIGLVFTDLTSGIPANFSRFVTNLPAFHRILVFVCIKSVPVPFVPPAERYLVGRVGPATHRSYRCIVRYGYRDVHQDVDSFESELIKKLADFIRYDWFRKQRGNSCSEDEASRSNESTSECRLAVIGTIAFAGATAYEETVQPASVSVGFQTVDSIADVIEMEPLGEERRVRFAIDDEFEGGSQAETEVLLQEELEDLIAAQQSGTAFILGHSHVRAKQGSSLLKRLAINYGYNFLRRNCRGADVALKVPPVSLLEVGMVYVV* 791
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6809332 6815427 - CsaV3_5G010840.1 Csa05g00886 529273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00886 790 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 1 790 IPR003855 GO:0015079|GO:0016020|GO:0071805
Csa05g00886 790 Pfam K+ potassium transporter 25 600 IPR003855 GO:0015079|GO:0016020|GO:0071805
Csa05g00886 790 TIGRFAM kup: potassium uptake protein 23 789 IPR003855 GO:0015079|GO:0016020|GO:0071805
Csa05g00886 790 PANTHER POTASSIUM TRANSPORTER 2 1 790 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00886 Csa-Chr5:6809332 Csa05g02908 Csa-Chr5:29584874 0 dispersed
Csa05g00886 Csa-Chr5:6809332 Csa03g03914 Csa-Chr3:34316948 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00886 K03549 - csv:101211022 1541.94