Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00892 ATGGCTTTTTCTTACTCACCCTTCTCCTCTCTCTTTCTTCTTCCTTTCTTCTTTGTCTTCACCTTCGCTGACTACGGTGGCTGGCAGAGCGGCCACGCCACCTTTTATGGTGGTGGTGACGCATCTGGCACCATGGGTGGAGCTTGTGGGTATGGGAATTTATACAGCCAAGGGTATGGCACGAACACGGTGGCGCTGAGCACTGCGCTATTTAACAATGGATTAAGTTGTGGTGCTTGCTTCGAAATGACTTGTACAAACGATCCTAAATGGTGCCTTCCGGGAACTATTAGGGTCACTGCCACCAACTTTTGCCCTCCTAACTTTGCTCTCCCTAACAACAATGGTGGATGGTGCAACCCTCCTCTCCAACATTTCGACATGGCTGAGCCTGCCTTCCTTCAAATCGCTCAATACCGAGCCGGTATCGTCCCCGTCTCCTTTCGTAGGGTACCATGTATGAAGAAAGGTGGAGTGAGGTTTACAATCAATGGCCACTCATACTTCAACCTCGTTTTGATCACAAACGTCGGTGGCGCAGGCGACGTCCACTCTGTGTCGATAAAGGGGTCTCGAACTGGATGGCAATCCATGTCTAGAAATTGGGGCCAAAACTGGCAAAGCAACAACTATCTCAATGGCCAAGGCCTTTCCTTTCAAGTCACTCTTAGTGATGGTCGCACTCTCACTGCCTATAATCTCGTTCCTTCCAATTGGCAATTTGGCCAAACCTATGAAGGCCCTCAATTCTAA 753 49.27 MAFSYSPFSSLFLLPFFFVFTFADYGGWQSGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTVALSTALFNNGLSCGACFEMTCTNDPKWCLPGTIRVTATNFCPPNFALPNNNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVSFRRVPCMKKGGVRFTINGHSYFNLVLITNVGGAGDVHSVSIKGSRTGWQSMSRNWGQNWQSNNYLNGQGLSFQVTLSDGRTLTAYNLVPSNWQFGQTYEGPQF* 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6920508 6923795 - CsaV3_5G010900.1 Csa05g00892 529279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00892 250 Pfam Lytic transglycolase 63 148 IPR009009 -
Csa05g00892 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 158 IPR007112 -
Csa05g00892 250 Pfam Expansin C-terminal domain 159 236 IPR007117 -
Csa05g00892 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 168 247 IPR007117 -
Csa05g00892 250 Gene3D - 158 250 IPR036749 -
Csa05g00892 250 PANTHER EXPANSIN 14 250 - -
Csa05g00892 250 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Csa05g00892 250 PRINTS Expansin signature 85 96 IPR002963 GO:0009664
Csa05g00892 250 PRINTS Expansin signature 97 107 IPR002963 GO:0009664
Csa05g00892 250 PRINTS Expansin signature 116 133 IPR002963 GO:0009664
Csa05g00892 250 PRINTS Expansin signature 133 146 IPR002963 GO:0009664
Csa05g00892 250 PRINTS Expansin signature 157 169 IPR002963 GO:0009664
Csa05g00892 250 PRINTS Expansin signature 169 190 IPR002963 GO:0009664
Csa05g00892 250 PRINTS Expansin signature 204 225 IPR002963 GO:0009664
Csa05g00892 250 PRINTS Expansin signature 233 249 IPR002963 GO:0009664
Csa05g00892 250 Gene3D - 19 154 IPR036908 -
Csa05g00892 250 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Csa05g00892 250 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Csa05g00892 250 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Csa05g00892 250 PRINTS Expansin/Lol pI family signature 141 157 IPR007118 GO:0005576
Csa05g00892 250 PRINTS Expansin/Lol pI family signature 195 209 IPR007118 GO:0005576
Csa05g00892 250 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Csa05g00892 250 SUPERFAMILY PHL pollen allergen 155 247 IPR036749 -
Csa05g00892 250 SUPERFAMILY Barwin-like endoglucanases 15 176 IPR036908 -
Csa05g00892 250 SMART dpbb_1 63 148 IPR007112 -
Csa05g00892 250 PANTHER EXPANSIN-A15 14 250 IPR002963 GO:0009664
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00844 Csa-Chr2:7719916 Csa05g00892 Csa-Chr5:6920508 4.30E-129 dispersed
Csa02g01712 Csa-Chr2:16862254 Csa05g00892 Csa-Chr5:6920508 6.29E-114 dispersed
Csa04g01497 Csa-Chr4:14702397 Csa05g00892 Csa-Chr5:6920508 2.31E-128 dispersed
Csa05g00892 Csa-Chr5:6920508 Csa05g02468 Csa-Chr5:26468526 1.25E-141 dispersed
Csa03g00625 Csa-Chr3:5430736 Csa05g00892 Csa-Chr5:6920508 8.93E-82 transposed
Csa05g00892 Csa-Chr5:6920508 Csa06g00228 Csa-Chr6:1563531 5.60E-150 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00892 - K20628 csv:101209633 508.834