Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00893 ATGGAACTCCCCAATCCCACTAATCCAATGGCTTCCTCTTCCAACCCCACTCCCCCATTTCGCGGTTCCTTCCACCGTCGAGCTCATTCCGAGGTCCATTTCCGGATTCCTGACGATCTCGATCTTGTCTCCGACCCTTTCGACGCCCCTTCTTCTGGATTTGAAGATCTGGGCTTTGAGGATGATCTCTTGTGTACTTTCATGGACATCGAGAAGATCGGATCTAAAATCGACAATGGGTCTTCGTCAAATCCTGCAATGGCTGCCGGTGGTACTGGGGGGGTGAATGTTGAAGGGGAGAAAATCTCACGCCCCAGGCATCGTCATAGCAATTCTGCTGATGGGTCTTCCATTTTGGAGTCTATTGAGGCTAAGAAGGCCATGGATCCTGATAAGCTCGCTGAGTTGTGGACTATTGATCCTAAACGTGCCAAGAGGATTTTGGCAAATAGACAGTCTGCTGCTCGGTCAAAAGAGAGGAAAGCTCGCTACATAATGGAACTTGAGAGAAAAGTTCAAAGCCTTCAGACCGAAGCAACAACTCTCTCTGCACAGCTCACATTGTATCAGAGAGATACCACTGGGCTTTCAACTGAAAACTCAGAGCTCAAACTTCGTTTACAAGCTATGGAACAGCAAGCTCATTTACGCGATGCTCTAAATGAAGCTTTGAAAAAAGAAGTTGAGCGGCTCAAGATTGCGACGGGAGAAGTAATGACAGCAACGGATTCGTATAACTTTGGAATGCCTCAAGTTTCATATCCCCAATCTTCCTTTTCACACCAACCACAACCTGGGCGACACAACCCACAGAGGATGACGATGCAAAGACCCCAAGTTCAACCATTCCATTCTAATTTACCAAACCCACATCAGGCTTTGTTTGTTGCATCGCACCAGCCTCATGCCTTAACAGAAATGTTTCAGCAGGATCCTATTACCCGATTGCAGGGTCTTGATATTGGTAGCAGAGGCACAGAAATAAAGCCCGAAGGCCCCTCGATATCGGTCAGTGAAAGTAGCAGCACATTTTAA 1035 47.25 MELPNPTNPMASSSNPTPPFRGSFHRRAHSEVHFRIPDDLDLVSDPFDAPSSGFEDLGFEDDLLCTFMDIEKIGSKIDNGSSSNPAMAAGGTGGVNVEGEKISRPRHRHSNSADGSSILESIEAKKAMDPDKLAELWTIDPKRAKRILANRQSAARSKERKARYIMELERKVQSLQTEATTLSAQLTLYQRDTTGLSTENSELKLRLQAMEQQAHLRDALNEALKKEVERLKIATGEVMTATDSYNFGMPQVSYPQSSFSHQPQPGRHNPQRMTMQRPQVQPFHSNLPNPHQALFVASHQPHALTEMFQQDPITRLQGLDIGSRGTEIKPEGPSISVSESSSTF* 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6934222 6940554 - CsaV3_5G010910.1 Csa05g00893 529280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00893 344 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 140 203 IPR004827 GO:0003700|GO:0006355
Csa05g00893 344 MobiDBLite consensus disorder prediction 1 20 - -
Csa05g00893 344 Coils Coil 158 185 - -
Csa05g00893 344 MobiDBLite consensus disorder prediction 317 344 - -
Csa05g00893 344 CDD bZIP_plant_RF2 143 192 IPR044759 GO:0003700|GO:0006355
Csa05g00893 344 Gene3D - 141 192 - -
Csa05g00893 344 SUPERFAMILY Leucine zipper domain 142 193 IPR046347 GO:0003700|GO:0006355
Csa05g00893 344 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 6 341 - -
Csa05g00893 344 MobiDBLite consensus disorder prediction 1 26 - -
Csa05g00893 344 PANTHER BZIP TRANSCRIPTION FACTOR 18 6 341 - -
Csa05g00893 344 Coils Coil 217 237 - -
Csa05g00893 344 Pfam bZIP transcription factor 142 196 IPR004827 GO:0003700|GO:0006355
Csa05g00893 344 SMART brlzneu 138 202 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01596 Csa-Chr3:11855707 Csa05g00893 Csa-Chr5:6934222 2.16E-67 dispersed
Csa05g00893 Csa-Chr5:6934222 Csa06g01114 Csa-Chr6:9232616 1.95E-121 dispersed
Csa07g00329 Csa-Chr7:2441338 Csa05g00893 Csa-Chr5:6934222 7.91E-22 dispersed
Csa05g00893 Csa-Chr5:6934222 Csa06g00532 Csa-Chr6:4513114 8.70E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31718 PF00170 bZIP_1 1.80E-08 CL0018 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00893 - - csv:101209388 669.848