Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00898 ATGTCCTCCGAAGACATCAATGGCCTCAACTCCCACCTCGTCTTCCAAGACGAATCCCTCCCTTTCAATTGCTCCTCCACCCCCCATCGTCGCCTCCCCGACCCACCTCCCAAAACCCGCGAACTCTGCGGTTTCATGGACGACAAGCTCTTCCCTGCCGTCGACCGTGACCGATTCTTTTCCCAACAGGGTGAGGATTTCCGCCGGAATGTGTTCGGTCACAACCGGAATTGGAATGGGACTGCGAGAACTGGAAGTGAGGAAGGATCGGATGAGGAGGAGGAGGAGGAGGACGACGACGACGATGAAGATGAAGTCGATGATGGCGATGATGGTGTTAAAGGGCTTGTTTCTTTGGATGATGTTAATAAGTGTAGTAAAACTGCTAACCCCATTTGCAGTAACAATGATAGAAGTGATCAGAGTAGTGGGGGGTTGAAGAATGGGACAGACAAATTGGGAAATGGGAAGCGTAAGCAGCATTCTTCTTTTGTCAAAGATGCTTTGGCTGGGTCTTCCGGAGTAACTCAGAGTGAAAACAATCCGCAGGGAAGGCTAGGGAATTATCCAAATGCGGTTACAGCTGCAGAGCCTGATAGTGAAGCTTATTATTCTCAGTATTTGCAAAGCAATGAAGGCTCTGCTTCTGAGCAGAAGGATTTGAGTATCGAAAATGGATGTGGTTTTGGGAGAAGGGATGTTTCGTTTTCAGGAGAGCCTAGAGAGTCTTTGAGAGCAATTCTCACTGACCCTGTGACGGGTGCTCTCATGGACGATGCAATGATATTGCCGTGTGGGCATTCCTTTGGGAGTGGTGGAATACAACATGTTCTTAGATTAAAATCTTGTTACTCGTGCTCTCAGTCAGTTTCTGAAGACTCTATTGCCCAAAACTTATCTCTTCAAGCTGCAGTCCAAGCATTCCGCCGCGAAGAAGAATTATTATTTTACCACTCACCGAAACGGAGAAGGGAGAGGTTTGAGCAGGAAAAGGGTGGTTATGGTGATTTGACGCTCATGGATACTCAAAGAGGTCGAGGTGTTCAGTTTCCCTTTGCGGTGACAGATAGGGTAATTATTAAGGGGAACAAGAGGACGCCGCAACGTTTTGTGGGACGTGAGGCTGTTGTTACAACACAGTGCTTGAATGGATGGTATGTGGTGAAAACGCTAGACAATGCAGAGAGTGTAAAGTTGCAGTACCGCTCACTTGCAAAGGTTCAAAATGATGCAACATCAAAGATGATAACAAGGAAGATGATGCCAAATTGGCTCTAG 1278 47.34 MSSEDINGLNSHLVFQDESLPFNCSSTPHRRLPDPPPKTRELCGFMDDKLFPAVDRDRFFSQQGEDFRRNVFGHNRNWNGTARTGSEEGSDEEEEEEDDDDDEDEVDDGDDGVKGLVSLDDVNKCSKTANPICSNNDRSDQSSGGLKNGTDKLGNGKRKQHSSFVKDALAGSSGVTQSENNPQGRLGNYPNAVTAAEPDSEAYYSQYLQSNEGSASEQKDLSIENGCGFGRRDVSFSGEPRESLRAILTDPVTGALMDDAMILPCGHSFGSGGIQHVLRLKSCYSCSQSVSEDSIAQNLSLQAAVQAFRREEELLFYHSPKRRRERFEQEKGGYGDLTLMDTQRGRGVQFPFAVTDRVIIKGNKRTPQRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVQNDATSKMITRKMMPNWL* 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6968132 6972180 - CsaV3_5G010960.1 Csa05g00898 529285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00898 425 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62 42 425 - -
Csa05g00898 425 MobiDBLite consensus disorder prediction 166 188 - -
Csa05g00898 425 MobiDBLite consensus disorder prediction 71 192 - -
Csa05g00898 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 242 314 IPR013083 -
Csa05g00898 425 MobiDBLite consensus disorder prediction 88 110 - -
Csa05g00898 425 ProSiteProfiles U-box domain profile. 243 315 IPR003613 GO:0004842|GO:0016567
Csa05g00898 425 MobiDBLite consensus disorder prediction 123 149 - -
Csa05g00898 425 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 42 425 - -
Csa05g00898 425 SUPERFAMILY RING/U-box 242 316 - -
Csa05g00898 425 MobiDBLite consensus disorder prediction 20 40 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00898 - - - csv:101218241 801.971
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04155 Csa-Chr3:36514717 Csa05g00898 Csa-Chr5:6968132 0 dispersed
Csa05g00898 Csa-Chr5:6968132 Csa05g01011 Csa-Chr5:9559126 2.89E-43 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g172 . . . . . . . . . . Cma04g01063 Cma04g00104 Car04g00098 . . . . . . . . . . . Cla07g00485 Cam07g0521 Cec07g0574 . Clacu07g0529 Cmu07g0566 Cre07g0899 Cone1ag1616 Cone5ag0138 . . . . Chy10g00311 Cme10g01252 . . . . . . . . . . . . . . . Cpe01g00964 . . . . . . . . . . . . . . . Lsi04g01019 Csa05g00898 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g00037 . 9 728 Plant U-box Gene Family AT5G57035 52.7 9.7e-222 766.9
Csa03g04155 . 191 425 Plant U-box Gene Family AT5G05230 58.8 1.2e-70 263.8
Csa05g00898 . 192 426 Plant U-box Gene Family AT5G05230 59.6 2.7e-70 262.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004883 1 1 1 1 1 1 2 1 1 2 1 1 2 2 2 0 1 2 1 1 2 1 1 1 1 1 1 2 4 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00898 Csa_Chr05 FPKM 5.709402 7.102374 3.283988 3.157712 9.263302 7.040354 7.24807 3.244667 3.743336 3.874202