Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00901 ATGCGAGCATTTTTGAAGATGAAACGACTGATTGAGTTTTTCATCTTGTTCGTTTTGGCTCCACTTTGTGCTCGATGTGTAAACCTATCTTTAAACGGCGACGTTTTGGGTCTGATTGTGTTTAAAGCTGCTGTTCAAGATCCCAAGCTGAAACTCGCGAGTTGGAACGAAGATGACGATAGTCCCTGCAATTGGACTGGTGTTCAATGTAGTCCCAGATCCAAACGAGTCATCGAGCTCAACCTCAATGGCTTCTCTCTCTCGGGTCGGCTTGGCCGAGGGCTTTTCCAGTTGGAATTTCTGCAGAGATTATCGCTCTCGAATAACAATCTTACTGGAAATATAAGCCCTAATTTTGCTCGAGTGGACAATCTTCAGGTGATTGATTTGAGTGGGAATAATTTCTCCGGTGTTGTTTCGGATGATTTTTTTCGTCAATGTAGGTCATTGAGAGTCGTTTCTTTGGCTAACAACAAATTTTCTGGAAAAATTCCTGATAGTTTGAGCTTGTGCGGGAGTCTTATTTCAGTTAACTTTTCCTCGAATCAGTTTTCGGGTTCTTTGCCTTCTGGAATTTGGTCTTTCAGTGGGCTTCGATCTTTGGACTTGTCTGATAATGCTCTGTTGGGTGAAATTCCAAAGGTAATTGAGAATTTGTATAATCTGCGGACTCTTAACTTGAGCAAGAATCAATTCTCTGGACATATTCCTGATGGTATTGGGAGCTGTTTGCTTCTGAGGTCCATTGATCTTAGTGAGAATTCATTCTCTGGGAATCTTCCTCAGACCATGCAGAAACTTGTTTTGTGTAGTAATCTGATTTTAGGCAGGAATTTGTTTGATGGAGATGTTCCAGAGTGGGTAGGGGAAATGAAAAGCCTTGAAACTCTGGACTTTTCACGGAACAATTTTACTGGTCGTATTCCAACTACAATAGAGAATCTTCAATATCTAAAAGTTTTGAATCTCTCTTCAAATGGCTTTACTGATAGCTTTCCAGAATCTGTTATGAAGTGCCAAAGCCTTTTGGCGTTAGATTTGAGCCATAATTTAATCATGGGCAATCTTCCTGAGATCGGAAGTTTACGCAAGCTGCAGATTCTGAGCCTGTCTGGGAATTATTTTGTTGGTTCTCTTCCAAAAACTATTGGAGATTTGAAAGCTTTAAGCATTCTTGATTTGAGTGGAAATCAGTTGAACGAAACCATTCCTGTTGCAATTGGAGGAGCTGTGTCCCTAATTGAGCTGAAGCTGGATGGGAATTTTCTAAGGGGTGAAATTCCCTTTTCAATTGCTCACTGTTCTTCCCTTACAACTCTGTTCATATCACACAATAACATAACTGGACCAATACCAGCAGCACTAGCTAAACTCTCTTATCTTCAAAATGTCGATTTATCCTTTAACAATCTCAATGGAACCCTTCCAAAGCAGTTGTCTAATCTTCCAAACCTTCTTGTGTTCAATATATCTCACAACAACTTTAAGGGTGAGCTGCCAGGTGGTGGATTCTTTAACACAATCTCCCCTTCATCCGTTACTGGGAATCCATCCCTTTGTGGCTCTGTTGTTAATAAATCTTGCCCGTCTGTCCTTCCGAAACCTATTGTTCTTAATCCCAACTCGACATCAGATTCCATTTCCAGCTCGCTGCCACCAAGTAATAATCACAAAAGAAATAGAAATATCCTCAGCATTTCTGCCCTGGTTGCCATTGGTGCCGCTGCTTTTATAATCATTGGTGTAATCTCGATCACCATCCTCAACCTTCGCGTTCAATCACCCACGTCTTCTTCGTCTGCAGCTGCACTTGCATTATCTGTTGGGGATGATTTCAGTAATTCCTCCAGTCCCGATGCAAATTCTGGAAAGCTTGTGGTGTTATCAGGAGAACTTGACTTTAGCACAGGAGCTCATGCCTTACTGAACAAGGATTGTGAGCTTGGACGTGGTGGATTTGGAGCAGTTTACCATACTATTCTGCGGGATGGACACTCAGTTGCAATCAAGAAGCTTACAGTTTCTAGCCTTGTCAAGTCCCAAGAGGATTTCGAGAGGGAAGTTAGGAAGTTTGGCATTGTCAGGCACCAAAATCTCGTGGCACTCGAAGGTTATTATTGGACTCCGTCACTACAACTCCTTATATACGAATTTGTCTCCGGAGGTAGCTTGTATAGGTTGCTCCATGAAGCGTCGGATGACAATGTCCTGTCATGGAATGAGAGATTTGACATAATTCTTGGTACAGCCAAAGGTCTTGCTCACTTACATCAATCAAACACAATCCACTATAACATAAAATCCAGCAACATTCTTATTGACCGTAATGGTCAACCTAAGGTGGGAGATTATGGTCTAGCTAGATTGCTGCCAATGTTAGACCGTTATGTTTTAAGTAGCAAGATCCAAAGTGCGCTTGGTTACATGGCACCTGAATTTACTTGCAGAACAGTGAAGATAACTGAAAAATGCGATGTGTATGGCTTCGGGATATTAATTCTAGAGGTGGTTACAGGGAAAAGACCTGTTGAGTACATGGAAGACGACGTTGCAGTCCTCAGCGACATGGTCAGAGAAGCAGTGGAAGAAGGAAGAGCCGAAGAATGCGTTGACAGGAATCTGAGAGGGAGCTTCCCAATGGAAGAGGCTGTTCCAGTGTTAAAATTAGGCTTGATATGCACATCCCACGTGCCATCAAACCGACCCGACATGAGAGAAATGGTTAAGATTTTGGAGATGATCAAATGTCCATCTGAATTACAAGAAGAATTGGGATAA 2778 42.04 MRAFLKMKRLIEFFILFVLAPLCARCVNLSLNGDVLGLIVFKAAVQDPKLKLASWNEDDDSPCNWTGVQCSPRSKRVIELNLNGFSLSGRLGRGLFQLEFLQRLSLSNNNLTGNISPNFARVDNLQVIDLSGNNFSGVVSDDFFRQCRSLRVVSLANNKFSGKIPDSLSLCGSLISVNFSSNQFSGSLPSGIWSFSGLRSLDLSDNALLGEIPKVIENLYNLRTLNLSKNQFSGHIPDGIGSCLLLRSIDLSENSFSGNLPQTMQKLVLCSNLILGRNLFDGDVPEWVGEMKSLETLDFSRNNFTGRIPTTIENLQYLKVLNLSSNGFTDSFPESVMKCQSLLALDLSHNLIMGNLPEIGSLRKLQILSLSGNYFVGSLPKTIGDLKALSILDLSGNQLNETIPVAIGGAVSLIELKLDGNFLRGEIPFSIAHCSSLTTLFISHNNITGPIPAALAKLSYLQNVDLSFNNLNGTLPKQLSNLPNLLVFNISHNNFKGELPGGGFFNTISPSSVTGNPSLCGSVVNKSCPSVLPKPIVLNPNSTSDSISSSLPPSNNHKRNRNILSISALVAIGAAAFIIIGVISITILNLRVQSPTSSSSAAALALSVGDDFSNSSSPDANSGKLVVLSGELDFSTGAHALLNKDCELGRGGFGAVYHTILRDGHSVAIKKLTVSSLVKSQEDFEREVRKFGIVRHQNLVALEGYYWTPSLQLLIYEFVSGGSLYRLLHEASDDNVLSWNERFDIILGTAKGLAHLHQSNTIHYNIKSSNILIDRNGQPKVGDYGLARLLPMLDRYVLSSKIQSALGYMAPEFTCRTVKITEKCDVYGFGILILEVVTGKRPVEYMEDDVAVLSDMVREAVEEGRAEECVDRNLRGSFPMEEAVPVLKLGLICTSHVPSNRPDMREMVKILEMIKCPSELQEELG* 926
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6985023 6989382 - CsaV3_5G010990.1 Csa05g00901 529288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00901 925 CDD STKc_IRAK 648 912 - -
Csa05g00901 925 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Csa05g00901 925 SUPERFAMILY L domain-like 33 280 - -
Csa05g00901 925 Gene3D Ribonuclease Inhibitor 316 532 IPR032675 -
Csa05g00901 925 ProSitePatterns Protein kinases ATP-binding region signature. 648 671 IPR017441 GO:0005524
Csa05g00901 925 ProSiteProfiles Leucine-rich repeat profile. 341 363 IPR001611 GO:0005515
Csa05g00901 925 ProSiteProfiles Protein kinase domain profile. 642 914 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g00901 925 Pfam Protein tyrosine and serine/threonine kinase 644 911 IPR001245 GO:0004672|GO:0006468
Csa05g00901 925 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE IRK-RELATED 7 358 - -
Csa05g00901 925 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE IRK-RELATED 358 916 - -
Csa05g00901 925 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 358 916 - -
Csa05g00901 925 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 7 358 - -
Csa05g00901 925 SUPERFAMILY L domain-like 195 545 - -
Csa05g00901 925 SUPERFAMILY Protein kinase-like (PK-like) 646 912 IPR011009 -
Csa05g00901 925 Gene3D Transferase(Phosphotransferase) domain 1 719 923 - -
Csa05g00901 925 Gene3D Phosphorylase Kinase; domain 1 631 718 - -
Csa05g00901 925 Gene3D Ribonuclease Inhibitor 32 315 IPR032675 -
Csa05g00901 925 SMART LRR_typ_2 219 243 IPR003591 -
Csa05g00901 925 SMART LRR_typ_2 386 410 IPR003591 -
Csa05g00901 925 SMART LRR_typ_2 482 506 IPR003591 -
Csa05g00901 925 SMART LRR_typ_2 195 218 IPR003591 -
Csa05g00901 925 SMART LRR_typ_2 122 145 IPR003591 -
Csa05g00901 925 SMART LRR_typ_2 291 315 IPR003591 -
Csa05g00901 925 SMART LRR_typ_2 362 385 IPR003591 -
Csa05g00901 925 SMART LRR_typ_2 98 121 IPR003591 -
Csa05g00901 925 Pfam Leucine rich repeat 436 495 IPR001611 GO:0005515
Csa05g00901 925 Pfam Leucine rich repeat 197 255 IPR001611 GO:0005515
Csa05g00901 925 Pfam Leucine rich repeat 363 421 IPR001611 GO:0005515
Csa05g00901 925 Pfam Leucine rich repeat 293 352 IPR001611 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa05g00901 Csa06g00234 CCT
Csa05g00901 Csa06g00234 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02997 Csa-Chr3:28544297 Csa05g00901 Csa-Chr5:6985023 0 dispersed
Csa04g00347 Csa-Chr4:2104623 Csa05g00901 Csa-Chr5:6985023 0 dispersed
Csa05g00901 Csa-Chr5:6985023 Csa03g01130 Csa-Chr3:8912410 4.14E-40 dispersed
Csa05g00901 Csa-Chr5:6985023 Csa06g00234 Csa-Chr6:1602954 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78230 PF07714 PK_Tyr_Ser-Thr 4.00E-41 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00901 - - csv:101217762 1738.78